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Oregon Health & Science University
- Portland, OR
- https://jonbakerlab.github.io
- @jonbakerlab
- jonbakerlab
Popular repositories Loading
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oral-microbiome-omics-review
oral-microbiome-omics-review PublicThis repository contains a preprint of my review on omics and bioinformatics technologies in the context of oral microbiome research
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B04Sm5_genome_completion
B04Sm5_genome_completion PublicForked from jaybake5/B04Sm5_genome_completion
Completing and closing the genome of Streptococcus mutans strain B04Sm5 using composite long and short-read sequencing.
Shell
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Oral_Microbiome_Chapter
Oral_Microbiome_Chapter PublicForked from jaybake5/Oral_Microbiome_Chapter
Scripts used in the "Identification of bacterial biosynthetic gene clusters associated with caries" Chapter of Oral Microbiome volume of Methods in Molecular Biology
Python
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JB001_genome_completion
JB001_genome_completion PublicScripts, parameters, and versions of the software tools used to complete the genome of JB001.
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Smutans-pangenome
Smutans-pangenome PublicRepository containing the pangenome of Streptococcus mutans created by Jonathon L Baker using Anvi'o.
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nanopore-oral-genomes
nanopore-oral-genomes PublicThis repository contains supplemental data files for the publication "Using nanopore sequencing to obtain complete genomes from saliva samples"
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