Skip to content

jiangyuanluo/Structural_Variants_pipeline

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

36 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Structural_Variants_pipeline

This pipeline consists of Genome STRiP, LUMPY, ERDS, and CNVnator 4 algorithms. FusorSV integrates the outputs from Genome STRiP, LUMPY, and CNVnator. SV statistics and Mendel errors calling are in the Statistics folder. I tested these algorithms using the samples( with paths) in the file called batch_all.list in Genome STRiP folder.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 79.5%
  • Shell 7.3%
  • Python 6.0%
  • Java 5.3%
  • Perl 1.8%
  • R 0.1%