This pipeline consists of Genome STRiP, LUMPY, ERDS, and CNVnator 4 algorithms. FusorSV integrates the outputs from Genome STRiP, LUMPY, and CNVnator. SV statistics and Mendel errors calling are in the Statistics folder. I tested these algorithms using the samples( with paths) in the file called batch_all.list in Genome STRiP folder.
forked from hjzhou988/Structural_Variants_pipeline
-
Notifications
You must be signed in to change notification settings - Fork 0
jiangyuanluo/Structural_Variants_pipeline
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
About
No description, website, or topics provided.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- Jupyter Notebook 79.5%
- Shell 7.3%
- Python 6.0%
- Java 5.3%
- Perl 1.8%
- R 0.1%