update quarto dockerfile

ottr_quarto/Dockerfile

@@ -1,81 +1,5 @@
-FROM rocker/tidyverse:4.0.2
+FROM jhudsl/base_ottr:main
 LABEL maintainer="[email protected]"
-WORKDIR /rocker-build/
-
-COPY install_github.R .
-
-# Install apt-getable packages to start
-RUN apt-get update && apt-get install -y --no-install-recommends apt-utils dialog
-RUN apt-get install -y --no-install-recommends \
-    libxt6 \
-    libpoppler-cpp-dev \
-    vim \
-    libglpk40 \
-    curl \
-    gpg
-
-# Install gh
-RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg;
-RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null;
-RUN apt update && apt install -y gh;
-
-# Remove old symlinks to old pandoc
-RUN unlink /usr/lib/rstudio-server/bin/pandoc/pandoc
-
-# Uninstall old version of pandoc
-RUN sudo apt-get purge pandoc pandoc-citeproc pandoc-data \
-  && sudo apt-get autoremove --purge
-
-# Install pandoc
-RUN wget https://github.com/jgm/pandoc/releases/download/2.14.1/pandoc-2.14.1-1-amd64.deb \
-  && sudo apt-get install ./pandoc-2.14.1-1-amd64.deb
-
-# Create new symlinks
-RUN ln -s /usr/bin/pandoc /usr/lib/rstudio-server/bin/pandoc/pandoc
-
-# Add curl, bzip2
-RUN apt-get update -qq && apt-get -y --no-install-recommends install \
-    bzip2 \
-    curl
-
-# Install pip3 and installation tools
-RUN apt-get -y --no-install-recommends install \
-    python3-pip  python3-dev
-
-RUN Rscript -e "remove.packages('rlang')"
-
-# Commonly used R packages
-RUN Rscript -e  "options(warn = 2);install.packages( \
-    c('rlang', \
-      'bookdown', \
-      'emojifont', \
-      'here', \
-      'leanpubr', \
-      'optparse', \
-      'oro.nifti', \
-      'qpdf', \
-      'R.utils', \
-      'rprojroot', \
-      'rgoogleslides', \
-      'servr', \
-      'spelling', \
-      'styler', \
-      'reticulate', \
-      'gh', \
-      'tibble'), \
-      repos = 'https://cloud.r-project.org/')"
-
-# cow needs this dependency:
-RUN Rscript -e  "devtools::install_version('gitcreds', version = '0.1.1', repos = 'http://cran.us.r-project.org')"
-
-# Copy over git token and package list
-COPY git_token.txt .
-COPY github_package_list.tsv .
-
-# Install packages from github
-RUN Rscript install_github.R \
-  --packages github_package_list.tsv \
-  --token git_token.txt
 
 RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb
 RUN gdebi --non-interactive quarto-linux-amd64.deb