ISMapper v0.1.4

Wed 7 Oct 2015

• can now supply output directory using --directory command
• can now ask BWA to use multiple threads using --t command
• fixed some cases where an unpaired hit would pair incorrectly with itself
• correct distances returned if the flanking gene should be the first or last
  gene in the reference
• fixed an error where no hits reported but bed files are non-empty
• possible related IS call must now meet 50% ID and 50% coverage threshold
  otherwise the hit is discarded