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Feature/mayo#87

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rohandavidg wants to merge 17 commits intojerryji1993:masterjerryji1993/DNABERT:masterfrom chian:feature/Mayochian/DNABERT:feature/MayoCopy head branch name to clipboard

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Commits on May 23, 2022

• created code to generate kmer sequence from an input vcf file

  

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  82b8dfa

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Commits on Jun 1, 2022

• Merge pull request #1 from chian/feature/Mayo

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  chian

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Commits on Jun 3, 2022

• added code to create a reference as well

  

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  7b8400f

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• fixed a bug with sequence generation when vcf is missing ALT

  

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  d7b5343

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Commits on Jun 20, 2022

• Create data_integration.py

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  smujiang

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  f76afca

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• Create get_last_hidden_state_multiprocessing.py

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  smujiang

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  cf5b09a

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Commits on Jul 6, 2022

• added new code to annotate vcf with bed file

  

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  9bef4b7

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• added new code for vcf annotation

  

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  5c06211

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• Merge https://github.com/chian/DNABERT into feature/Mayo

  

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  4e08098

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• Merge branch 'feature/Mayo' of https://github.com/chian/DNABERT into feature/Mayo

  

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  5abde48

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Commits on Oct 12, 2022

• added code to do random insertions

  

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  c5b3ee3

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Commits on Nov 3, 2022

• modified code for duplicate generation

  

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  bef8c3a

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Commits on Nov 4, 2022

• updated code for randome inserts

  

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  ea0cf39

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Commits on Nov 8, 2022

• updated code to use cyvcf2 and gzip output

  

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  517f632

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• Add script for generating input for GENA-LM BERT

  ChuanyiZ

  committed
  e822e6f

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Commits on Feb 12, 2023

• updates to code that has the duplication module

  

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  2804856

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Commits on Mar 13, 2023

• Fix errors in reading VCF file

  ChuanyiZ

  committed
  128c527

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