duohmm

Documentation:

https://mathgen.stats.ox.ac.uk/genetics_software/duohmm/duohmm.html

Publication:

A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness

Build:

export BOOST_ROOT=/my/boost/installation/ ##optional

git clone https://github.com/jaredo/duohmm.git
cd duohmm/
make -j 4

Docker:

make clean
docker build -t duohmm .