fix clustalw test

jamesmkrieger · Dec 3, 2024 · c95c25a · c95c25a
1 parent a1d5b61
commit c95c25a
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Showing 2 changed files with 18 additions and 3 deletions.
diff --git a/prody/tests/datafiles/msa_3hsyA_3o21A_clustalw.fasta b/prody/tests/datafiles/msa_3hsyA_3o21A_clustalw.fasta
@@ -0,0 +1,16 @@
+>A2
+--NSIQIGGLFPRGADQEYSAFRVGMVQFSTSE------FRLTPHIDNLEVANSFAVTNA
+FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGAL
+LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNIN------------
+-----RRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSG
+FQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI
+EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK
+TNGPRKIGYWSEVDKMVVT--------------------
+>A3
+FPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNA
+FCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAI
+LSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEM
+DRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITG
+FQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRV
+DVS-----GDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMK
+VSGSRKAGYWNEYERFVPF--------------------
diff --git a/prody/tests/sequence/test_analysis.py b/prody/tests/sequence/test_analysis.py
@@ -1214,7 +1214,6 @@ def testBuildMSAclustalw(self):
         sequences = [ags[0].protein["A"].getSequence(),
                      ags[1].protein["A"].getSequence()]
 
-        expect1 = parseMSA(pathDatafile('msa_3hsyA_3o21A.fasta'))
-        expect2 = parseMSA(pathDatafile('msa_3hsyA_3o21A_new.fasta'))
+        expect1 = parseMSA(pathDatafile('msa_3hsyA_3o21A_clustalw.fasta'))
         result = buildMSA(sequences, method="clustalw", labels=["A2", "A3"])
-        assert result in (expect1, expect2), "The list of expected buildMSA results did not contain " + result
+        assert result == expect1, "The list of expected buildMSA clustalw results did not contain " + result