build_quarto_site() for release 1.1.0

README.md

@@ -22,82 +22,89 @@ Feel free to use and/or fork this project!
 Notebooks in this package:
 
 - [FaultTree.widget
-  Test](https://jabenninghoff.github.io/rtraining/FaultTree.html)
+  Test](https://jabenninghoff.github.io/rtraining/analysis/FaultTree.html)
   (2021-09-30): Notebook for testing FaultTree.widget rendering fixes.
 - [Advanced R
-  (Foundations)](https://jabenninghoff.github.io/rtraining/advanced-r-1.html)
+  (Foundations)](https://jabenninghoff.github.io/rtraining/analysis/advanced-r-1.html)
   (2022-06-12): Workbook for completing quizzes and exercises from the
   “Foundations” chapters of [Advanced
   R](https://adv-r.hadley.nz/index.html), second edition, with
   comparisons to solutions from [Advanced R
   Solutions](https://advanced-r-solutions.rbind.io).
 - [Advanced R (Functional
-  programming)](https://jabenninghoff.github.io/rtraining/advanced-r-2.html)
+  programming)](https://jabenninghoff.github.io/rtraining/analysis/advanced-r-2.html)
   (2022-07-31): Workbook for completing quizzes and exercises from the
   “Functional programming” chapters of [Advanced
   R](https://adv-r.hadley.nz/index.html), second edition, with
   comparisons to solutions from [Advanced R
   Solutions](https://advanced-r-solutions.rbind.io).
 - [Advanced R (Object-oriented
-  programming)](https://jabenninghoff.github.io/rtraining/advanced-r-3.html)
+  programming)](https://jabenninghoff.github.io/rtraining/analysis/advanced-r-3.html)
   (2022-08-15): Workbook for completing quizzes and exercises from the
   “Object-oriented programming” chapters of [Advanced
   R](https://adv-r.hadley.nz/index.html), second edition, with
   comparisons to solutions from [Advanced R
   Solutions](https://advanced-r-solutions.rbind.io).
 - [Advanced R
-  (Metaprogramming)](https://jabenninghoff.github.io/rtraining/advanced-r-4.html)
+  (Metaprogramming)](https://jabenninghoff.github.io/rtraining/analysis/advanced-r-4.html)
   (2023-02-19): Workbook for completing quizzes and exercises from the
   “Metaprogramming” chapters of [Advanced
   R](https://adv-r.hadley.nz/index.html), second edition, with
   comparisons to solutions from [Advanced R
   Solutions](https://advanced-r-solutions.rbind.io).
 - [ggplot2 (Getting
-  started)](https://jabenninghoff.github.io/rtraining/ggplot2-1.html)
+  started)](https://jabenninghoff.github.io/rtraining/analysis/ggplot2-1.html)
   (2022-11-20): Workbook for completing quizzes and exercises from the
   “Getting started” chapters of [ggplot2: Elegant Graphics for Data
   Analysis](https://ggplot2-book.org/index.html), third edition, with
   comparisons to solutions from [Solutions to ggplot2: Elegant Graphics
   for Data Analysis](https://ggplot2-book-solutions-3ed.netlify.app).
 - [ggplot2
-  (Layers)](https://jabenninghoff.github.io/rtraining/ggplot2-2.html)
+  (Layers)](https://jabenninghoff.github.io/rtraining/analysis/ggplot2-2.html)
   (2022-11-20): Workbook for completing quizzes and exercises from the
   “Layers” chapters of [ggplot2: Elegant Graphics for Data
   Analysis](https://ggplot2-book.org/index.html), third edition, with
   comparisons to solutions from [Solutions to ggplot2: Elegant Graphics
   for Data Analysis](https://ggplot2-book-solutions-3ed.netlify.app).
 - [ggplot2
-  (Scales)](https://jabenninghoff.github.io/rtraining/ggplot2-3.html)
+  (Scales)](https://jabenninghoff.github.io/rtraining/analysis/ggplot2-3.html)
   (2022-12-03): Workbook for completing quizzes and exercises from the
   “Scales” chapters of [ggplot2: Elegant Graphics for Data
   Analysis](https://ggplot2-book.org/index.html), third edition, with
   comparisons to solutions from [Solutions to ggplot2: Elegant Graphics
   for Data Analysis](https://ggplot2-book-solutions-3ed.netlify.app).
 - [ggplot2
-  (Grammar)](https://jabenninghoff.github.io/rtraining/ggplot2-4.html)
+  (Grammar)](https://jabenninghoff.github.io/rtraining/analysis/ggplot2-4.html)
   (2022-12-09): Workbook for completing quizzes and exercises from the
   “Grammar” chapters of [ggplot2: Elegant Graphics for Data
   Analysis](https://ggplot2-book.org/index.html), third edition, with
   comparisons to solutions from [Solutions to ggplot2: Elegant Graphics
   for Data Analysis](https://ggplot2-book-solutions-3ed.netlify.app).
 - [ggplot2
-  (Extending)](https://jabenninghoff.github.io/rtraining/ggplot2-5.html)
+  (Extending)](https://jabenninghoff.github.io/rtraining/analysis/ggplot2-5.html)
   (2022-12-18): Workbook for completing quizzes and exercises from the
   “Extending” chapters of [ggplot2: Elegant Graphics for Data
   Analysis](https://ggplot2-book.org/index.html), third edition, with
   comparisons to solutions from [Solutions to ggplot2: Elegant Graphics
   for Data Analysis](https://ggplot2-book-solutions-3ed.netlify.app).
+- [R
+  Books](https://jabenninghoff.github.io/rtraining/analysis/r-books.html)
+  (2023-11-17): An actively maintained and curated list of R Books and
+  other recommended resources from my reading list.
 - [R Setup
-  Log](https://jabenninghoff.github.io/rtraining/r-setup-log.html)
+  Log](https://jabenninghoff.github.io/rtraining/analysis/r-setup-log.html)
   (2020-12-30): My notes on my personal R setup. I started my R journey
   in [September
   2020](https://www.information-safety.org/2020/09/11/working-with-r/)
-  after [SIRACon 2020](https://societyinforisk.org/event-3899786). My
-  current setup is documented in
+  after [SIRACon 2020](https://societyinforisk.org/event-3899786).
+  **Important:** this historical setup is outdated and differs from my
+  current approach, which is documented in
   [rdev](https://jabenninghoff.github.io/rdev/articles/rdev.html).
 - [R Training
-  Log](https://jabenninghoff.github.io/rtraining/r-training-log.html)
-  (2020-12-02): Notes on learning R and RStudio.
+  Log](https://jabenninghoff.github.io/rtraining/analysis/r-training-log.html)
+  (2020-12-02): Original notes on learning R and RStudio. An updated
+  reading list of R books and other recommended resources is available
+  in [R Books](r-books.html).
 
 ## Installation
 

docs/LICENSE.html

@@ -115,6 +115,12 @@
     <ul class="list-unstyled mt-1">
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 
+  <a href="./analysis/r-books.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">R Books</span></a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
   <a href="./analysis/r-training-log.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">R Training Log</span></a>
   </div>

docs/NEWS.html

@@ -115,6 +115,12 @@
     <ul class="list-unstyled mt-1">
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 
+  <a href="./analysis/r-books.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">R Books</span></a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
   <a href="./analysis/r-training-log.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">R Training Log</span></a>
   </div>
@@ -195,7 +201,8 @@
     <h2 id="toc-title">On this page</h2>
 
   <ul>
-  <li><a href="#rtraining-1.0.0" id="toc-rtraining-1.0.0" class="nav-link active" data-scroll-target="#rtraining-1.0.0">rtraining 1.0.0</a></li>
+  <li><a href="#rtraining-1.1.0" id="toc-rtraining-1.1.0" class="nav-link active" data-scroll-target="#rtraining-1.1.0">rtraining 1.1.0</a></li>
+  <li><a href="#rtraining-1.0.0" id="toc-rtraining-1.0.0" class="nav-link" data-scroll-target="#rtraining-1.0.0">rtraining 1.0.0</a></li>
   <li><a href="#rtraining-0.8.22" id="toc-rtraining-0.8.22" class="nav-link" data-scroll-target="#rtraining-0.8.22">rtraining 0.8.22</a></li>
   <li><a href="#rtraining-0.8.21" id="toc-rtraining-0.8.21" class="nav-link" data-scroll-target="#rtraining-0.8.21">rtraining 0.8.21</a></li>
   <li><a href="#rtraining-0.8.20" id="toc-rtraining-0.8.20" class="nav-link" data-scroll-target="#rtraining-0.8.20">rtraining 0.8.20</a></li>
@@ -268,6 +275,12 @@ <h2 id="toc-title">On this page</h2>
 
 
 
+<section id="rtraining-1.1.0" class="level1">
+<h1>rtraining 1.1.0</h1>
+<ul>
+<li>Added R Books: An actively maintained and curated list of R Books and other recommended resources from my reading list</li>
+</ul>
+</section>
 <section id="rtraining-1.0.0" class="level1">
 <h1>rtraining 1.0.0</h1>
 <ul>

docs/TODO.html

@@ -115,6 +115,12 @@
     <ul class="list-unstyled mt-1">
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 
+  <a href="./analysis/r-books.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">R Books</span></a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
   <a href="./analysis/r-training-log.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">R Training Log</span></a>
   </div>

docs/analysis/FaultTree.html

@@ -97,7 +97,7 @@
     "search-label": "Search"
   }
 }</script>
-<script src="../site_libs/htmlwidgets-1.6.2/htmlwidgets.js"></script>
+<script src="../site_libs/htmlwidgets-1.6.3/htmlwidgets.js"></script>
 <script src="../site_libs/d3-3.5.17/d3.min.js"></script>
 <link href="../site_libs/ftree-0.0.2/ftree_styles.css" rel="stylesheet">
 <script src="../site_libs/jquery-3.2.0/jquery.min.js"></script>
@@ -158,6 +158,12 @@
     <ul class="list-unstyled mt-1">
         <li class="sidebar-item">
   <div class="sidebar-item-container"> 
+  <a href="../analysis/r-books.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">R Books</span></a>
+  </div>
+</li>
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
   <a href="../analysis/r-training-log.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">R Training Log</span></a>
   </div>
@@ -302,16 +308,16 @@ <h1>Example</h1>
 <span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a><span class="fu">ftree2widget</span>(tree1, <span class="at">height =</span> <span class="dv">500</span>, <span class="at">width =</span> <span class="dv">800</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output-display">
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+<div id="htmlwidget-267ab9e2f01db59c5be5" style="width:100%;height:406px;" class="ftree_widget1 html-widget"></div>
+<script type="application/json" data-for="htmlwidget-267ab9e2f01db59c5be5">{"x":{"root":{"id":1,"gparent":-1,"tag":"top","type":14,"cfr":0.000222339590217002,"pbf":3.04575275244065e-07,"crt":0.00136986565331405,"moe":0,"condition":0,"cond_code":1,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"Site power loss","name2":"","children":[{"id":2,"gparent":1,"tag":"G_2","type":10,"cfr":-1,"pbf":0.000222339590217002,"crt":0.00136986565331405,"moe":0,"condition":1,"cond_code":0,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"neither emergency","name2":"generator operable","children":[{"id":3,"gparent":2,"tag":"G_3","type":11,"cfr":0.00163690899152319,"pbf":1.68851766373046e-05,"crt":0.00136986301369863,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"Independent failure","name2":"of generators","children":[{"id":4,"gparent":3,"tag":"","type":2,"cfr":0.2,"pbf":0.00410915765544528,"crt":0.00136986301369863,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":0.000273897562311695,"p2":0.0384615384615385,"collapse":0,"name":"e-gen set fails","name2":""},{"id":5,"gparent":3,"tag":"","type":2,"cfr":0.2,"pbf":0.00410915765544528,"crt":0.00136986301369863,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":0.000273897562311695,"p2":0.0384615384615385,"collapse":0,"name":"e-gen set fails","name2":""}]},{"id":6,"gparent":2,"tag":"G_6","type":12,"cfr":0.01,"pbf":0.000205457882772264,"crt":0.00136986301369863,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"Common cause","name2":"failure of generators","children":[{"id":7,"gparent":6,"tag":"E_7","type":4,"cfr":-1,"pbf":0.05,"crt":-1,"moe":0,"condition":1,"cond_code":0,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"Common cause","name2":"beta factor"},{"id":8,"gparent":6,"tag":"","type":2,"cfr":0.2,"pbf":0.00410915765544528,"crt":0.00136986301369863,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":0.000273897562311695,"p2":0.0384615384615385,"collapse":0,"name":"e-gen set fails","name2":""}]}]},{"id":9,"gparent":1,"tag":"E_9","type":3,"cfr":1,"pbf":-1,"crt":-1,"moe":0,"condition":0,"cond_code":0,"etype":0,"p1":-1,"p2":-1,"collapse":0,"name":"External power","name2":"interruption"}]}},"evals":[],"jsHooks":[]}</script>
 </div>
 </div>
 <p>Check rendering without height and width specified:</p>
 <div class="cell">
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 <div class="cell-output-display">
-<div class="ftree_widget1 html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-cd8c4e27eec077479671" style="width:100%;height:464px;"></div>
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