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minor formatting fix
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plbenveniste authored Jul 13, 2023
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4 changes: 2 additions & 2 deletions utils/convert_nnunet_to_bids.py
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Example of run:
$ python convert_nnunet_to_bids.py --path-conversion-dict /PATH/TO/DICT --path-segmentation-folder /PATH/SEG --path-dataset /PATH/DATASET --mask_name NAME
$ python convert_nnunet_to_bids.py --path-conversion-dict /PATH/TO/DICT --path-segmentation-folder /PATH/SEG --path-dataset /PATH/DATASET --mask-name NAME
Arguments:
--path-conversion-dict : Path to the json conversion dicionnary to identify corresponding original image to each segmentation.
--path-segmentation-folder : Path to the segmentation folder.
--path-dataset : Path to the dataset folder.
--mask_name : Name of the folder created at same location as `manual_masks` folder (default: 2d_nnUNet_maks)
--mask-name : Name of the folder created at same location as `manual_masks` folder (default: 2d_nnUNet_maks)
Todo:
*
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