Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adding config file for training the 2D segmentation model #3

Open
wants to merge 4 commits into
base: main
Choose a base branch
from

Conversation

rohanbanerjee
Copy link
Collaborator

This PR adds the config file to train the Ivadomed 2D Unet model for the segmentation of the spinal cord csf.
The training can be done by using the following command:

ivadomed -c mni_bmpd_csf-2d.json

Copy link
Member

@jcohenadad jcohenadad left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

don't push ".DS_Store" in the repos-- add it to .gitignore

Copy link
Member

@jcohenadad jcohenadad left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

i suggest putting scripts in "scripts/", not "preprocessing/"


"wandb": {
"wandb_api_key": "b5241158351bb1892078087d4fc9d0c3ae5e2b9b",
"project_name": "data_training_human_sc_csf_moco",
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

i'd remove 'moco' as this segmentation has nothing to do with moco (yet)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants