Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add sub-unf02 and sub-unf03 datasets #7

Merged
merged 8 commits into from
Jan 13, 2021
Merged

Add sub-unf02 and sub-unf03 datasets #7

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
8 commits
Select commit Hold shift + click to select a range
0155e84
Duplicate sub-unf01 data as sub-unf02 and sub-unf03
ahill187 Jan 5, 2021
a5e059d
update df_ref to include 3 datasets
ahill187 Jan 5, 2021
98f3343
Add gitignore file
ahill187 Jan 5, 2021
a83212e
update sub-unf02 and sub-unf03 to be unique subjects instead of copies
ahill187 Jan 5, 2021
92ed86c
Commit actual files (not git-annex)
ahill187 Jan 5, 2021
e4063c3
resample sub-unf02 and sub-unf03 to 0.1x0.1x0.1 using sct_resample
ahill187 Jan 7, 2021
2285846
resample sub-unf02 and sub-unf03 derivative files to 0.1x0.1x0.1
ahill187 Jan 7, 2021
9c8a907
update df_ref file
ahill187 Jan 8, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T1w_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T2star_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
1 change: 1 addition & 0 deletions derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{}
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T2w_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T1w_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T2star_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
1 change: 1 addition & 0 deletions derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{}
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T2w_lesion-manual.nii.gz
View file
Open in desktop
Binary file not shown.
Binary file added derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.nii.gz
View file
Open in desktop
Binary file not shown.
16 changes: 10 additions & 6 deletions df_ref.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,13 @@
AcquisitionMatrixPE,AcquisitionNumber,AcquisitionTime,BaseResolution,BodyPartExamined,ConsistencyInfo,ConversionSoftware,ConversionSoftwareVersion,DeviceSerialNumber,DwellTime,EchoTime,EchoTrainLength,FlipAngle,ImageOrientationPatientDICOM,ImageType,InPlanePhaseEncodingDirectionDICOM,InstitutionAddress,InstitutionName,InstitutionalDepartmentName,InversionTime,MRAcquisitionType,MagneticFieldStrength,Manufacturer,ManufacturersModelName,Modality,ParallelReductionFactorInPlane,PartialFourier,PatientPosition,PercentPhaseFOV,PhaseEncodingSteps,PhaseOversampling,PhaseResolution,PixelBandwidth,ProcedureStepDescription,ProtocolName,PulseSequenceDetails,ReceiveCoilActiveElements,ReceiveCoilName,ReconMatrixPE,RepetitionTime,SAR,ScanOptions,ScanningSequence,SequenceName,SequenceVariant,SeriesDescription,SeriesNumber,ShimSetting,SliceThickness,SoftwareVersions,StationName,TxRefAmp,datatype,extension,subject,suffix,filename,age,data_id,date_of_birth,date_of_scan,first_name,institution_id,last_name,pathology,sex
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,anat,.nii.gz,test002,T2w,sub-test002_T2w.nii.gz,,,,,,,,,-
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-test002_T2w_seg-manual.nii.gz,,,,,,,,,
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,anat,.nii.gz,test003,T2w,sub-test003_T2w.nii.gz,,,,,,,,,-
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-test003_T2w_seg-manual.nii.gz,,,,,,,,,
260,1,12:33:7.032500,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,,0.00372,,9,"[0, 1, 0, -0.00523601, 0, -0.999986]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",ROW,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,,1,3D,3,Siemens,Prisma_fit,MR,2,1,HFS,81.25,259,,1,150,spine_generic,T1w,%SiemensSeq%_tfl,"HC1-7;NC1,2",HeadNeck_64,320,2,0.0601922,IR,GR_IR,_tfl3d1_16,SK_SP_MP,T1w,2,"[620, -7194, -9127, 77, 28, -20, -10, -23]",1,syngo_MR_E11,MRC35049,266.247,anat,.nii.gz,unf01,T1w,sub-unf01_T1w.nii.gz,-,unknown,-,unknwon,unknown,unknown,unknown,unknwon,unknown
260,1,12:33:7.032500,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,,0.00372,,9,"[0, 1, 0, -0.00523601, 0, -0.999986]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",ROW,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,,1,3D,3,Siemens,Prisma_fit,MR,2,1,HFS,81.25,259,,1,150,spine_generic,T1w,%SiemensSeq%_tfl,"HC1-7;NC1,2",HeadNeck_64,320,2,0.0601922,IR,GR_IR,_tfl3d1_16,SK_SP_MP,T1w,2,"[620, -7194, -9127, 77, 28, -20, -10, -23]",1,syngo_MR_E11,MRC35049,266.247,anat,.nii.gz,unf01,T1w,sub-unf01_T1w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf01_T1w_seg-manual.nii.gz,,,,,,,,,
320,1,12:39:2.805000,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,2.5e-06,0.12,76,120,"[0, 1, 4.897e-12, 0, 4.897e-12, -1]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",COL,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,Department,,3D,3,Siemens,Prisma_fit,MR,3,1,HFS,100,422,0.8,1,625,spine_generic,T2w,%SiemensSeq%_tse_vfl,"HC5-7;NC1,2;SP1",Spine_32,320,1.5,0.533389,PFP,SE,_spcR_100,SK_SP_OSP,T2w,3,"[620, -7194, -9127, 77, 28, -20, -10, -23]",0.8,syngo_MR_E11,MRC35049,283.131,anat,.nii.gz,unf01,T2w,sub-unf01_T2w.nii.gz,-,unknown,-,unknwon,unknown,unknown,unknown,unknwon,unknown
320,1,12:39:2.805000,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,2.5e-06,0.12,76,120,"[0, 1, 4.897e-12, 0, 4.897e-12, -1]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",COL,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,Department,,3D,3,Siemens,Prisma_fit,MR,3,1,HFS,100,422,0.8,1,625,spine_generic,T2w,%SiemensSeq%_tse_vfl,"HC5-7;NC1,2;SP1",Spine_32,320,1.5,0.533389,PFP,SE,_spcR_100,SK_SP_OSP,T2w,3,"[620, -7194, -9127, 77, 28, -20, -10, -23]",0.8,syngo_MR_E11,MRC35049,283.131,anat,.nii.gz,unf01,T2w,sub-unf01_T2w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
ahill187 marked this conversation as resolved.
Show resolved Hide resolved
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf01_T2w_seg-manual.nii.gz,,,,,,,,,
260,1,12:33:7.032500,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,,0.00372,,9,"[0, 1, 0, -0.00523601, 0, -0.999986]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",ROW,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,,1,3D,3,Siemens,Prisma_fit,MR,2,1,HFS,81.25,259,,1,150,spine_generic,T1w,%SiemensSeq%_tfl,"HC1-7;NC1,2",HeadNeck_64,320,2,0.0601922,IR,GR_IR,_tfl3d1_16,SK_SP_MP,T1w,2,"[620, -7194, -9127, 77, 28, -20, -10, -23]",1,syngo_MR_E11,MRC35049,266.247,anat,.nii.gz,unf02,T1w,sub-unf02_T1w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf02_T1w_seg-manual.nii.gz,,,,,,,,,
320,1,12:39:2.805000,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,2.5e-06,0.12,76,120,"[0, 1, 4.897e-12, 0, 4.897e-12, -1]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",COL,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,Department,,3D,3,Siemens,Prisma_fit,MR,3,1,HFS,100,422,0.8,1,625,spine_generic,T2w,%SiemensSeq%_tse_vfl,"HC5-7;NC1,2;SP1",Spine_32,320,1.5,0.533389,PFP,SE,_spcR_100,SK_SP_OSP,T2w,3,"[620, -7194, -9127, 77, 28, -20, -10, -23]",0.8,syngo_MR_E11,MRC35049,283.131,anat,.nii.gz,unf02,T2w,sub-unf02_T2w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf02_T2w_seg-manual.nii.gz,,,,,,,,,
260,1,12:33:7.032500,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,,0.00372,,9,"[0, 1, 0, -0.00523601, 0, -0.999986]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",ROW,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,,1,3D,3,Siemens,Prisma_fit,MR,2,1,HFS,81.25,259,,1,150,spine_generic,T1w,%SiemensSeq%_tfl,"HC1-7;NC1,2",HeadNeck_64,320,2,0.0601922,IR,GR_IR,_tfl3d1_16,SK_SP_MP,T1w,2,"[620, -7194, -9127, 77, 28, -20, -10, -23]",1,syngo_MR_E11,MRC35049,266.247,anat,.nii.gz,unf03,T1w,sub-unf03_T1w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf03_T1w_seg-manual.nii.gz,,,,,,,,,
320,1,12:39:2.805000,320,SPINE,N4_VE11C_LATEST_20160120,dcm2niix,v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0,167006,2.5e-06,0.12,76,120,"[0, 1, 4.897e-12, 0, 4.897e-12, -1]","['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'DIS2D']",COL,Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5,IUGM,Department,,3D,3,Siemens,Prisma_fit,MR,3,1,HFS,100,422,0.8,1,625,spine_generic,T2w,%SiemensSeq%_tse_vfl,"HC5-7;NC1,2;SP1",Spine_32,320,1.5,0.533389,PFP,SE,_spcR_100,SK_SP_OSP,T2w,3,"[620, -7194, -9127, 77, 28, -20, -10, -23]",0.8,syngo_MR_E11,MRC35049,283.131,anat,.nii.gz,unf03,T2w,sub-unf03_T2w.nii.gz,-,unknown,-,unknown,unknown,unknown,unknown,unknown,unknown
,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sub-unf03_T2w_seg-manual.nii.gz,,,,,,,,,
4 changes: 3 additions & 1 deletion participants.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,2 +1,4 @@
participant_id sex age first_name last_name date_of_birth date_of_scan pathology data_id institution_id
sub-unf01 unknown - unknown unknown - unknwon unknwon unknown unknown
sub-unf01 unknown - unknown unknown - unknown unknown unknown unknown
sub-unf02 unknown - unknown unknown - unknown unknown unknown unknown
sub-unf03 unknown - unknown unknown - unknown unknown unknown unknown
64 changes: 64 additions & 0 deletions sub-unf02/anat/sub-unf02_T1w.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,64 @@
{
"Modality": "MR",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma_fit",
"InstitutionName": "IUGM",
"InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5",
"DeviceSerialNumber": "167006",
"StationName": "MRC35049",
"BodyPartExamined": "SPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "spine_generic",
"SoftwareVersions": "syngo_MR_E11",
"MRAcquisitionType": "3D",
"SeriesDescription": "T1w",
"ProtocolName": "T1w",
"ScanningSequence": "GR_IR",
"SequenceVariant": "SK_SP_MP",
"ScanOptions": "IR",
"SequenceName": "_tfl3d1_16",
"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS3D", "DIS2D"],
"SeriesNumber": 2,
"AcquisitionTime": "12:33:7.032500",
"AcquisitionNumber": 1,
"SliceThickness": 1,
"SAR": 0.0601922,
"EchoTime": 0.00372,
"RepetitionTime": 2,
"InversionTime": 1,
"FlipAngle": 9,
"PartialFourier": 1,
"BaseResolution": 320,
"ShimSetting": [
620,
-7194,
-9127,
77,
28,
-20,
-10,
-23 ],
"TxRefAmp": 266.247,
"PhaseResolution": 1,
"ReceiveCoilName": "HeadNeck_64",
"ReceiveCoilActiveElements": "HC1-7;NC1,2",
"PulseSequenceDetails": "%SiemensSeq%_tfl",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"PercentPhaseFOV": 81.25,
"PhaseEncodingSteps": 259,
"AcquisitionMatrixPE": 260,
"ReconMatrixPE": 320,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 150,
"ImageOrientationPatientDICOM": [
0,
1,
0,
-0.00523601,
0,
-0.999986 ],
"InPlanePhaseEncodingDirectionDICOM": "ROW",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0"
}
Binary file added sub-unf02/anat/sub-unf02_T1w.nii.gz
View file
Open in desktop
Binary file not shown.
68 changes: 68 additions & 0 deletions sub-unf02/anat/sub-unf02_T2star.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
{
"Modality": "MR",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma_fit",
"InstitutionName": "IUGM",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5",
"DeviceSerialNumber": "167006",
"StationName": "MRC35049",
"BodyPartExamined": "SPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "spine_generic",
"SoftwareVersions": "syngo_MR_E11",
"MRAcquisitionType": "2D",
"SeriesDescription": "GRE-ME",
"ProtocolName": "GRE-ME",
"ScanningSequence": "GR",
"SequenceVariant": "SP",
"ScanOptions": "SAT1",
"SequenceName": "_me2d1r3",
"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS2D"],
"SeriesNumber": 8,
"AcquisitionTime": "12:55:4.995000",
"AcquisitionNumber": 1,
"SliceThickness": 5,
"SpacingBetweenSlices": 5,
"SAR": 0.221731,
"EchoTime": 0.014,
"RepetitionTime": 0.6,
"FlipAngle": 30,
"PartialFourier": 1,
"BaseResolution": 448,
"ShimSetting": [
646,
-7447,
-9134,
-960,
-22,
1948,
967,
-33 ],
"TxRefAmp": 280.893,
"PhaseResolution": 1,
"ReceiveCoilName": "HeadNeck_64",
"ReceiveCoilActiveElements": "HC7;NC1,2",
"PulseSequenceDetails": "%SiemensSeq%_medic",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"PercentPhaseFOV": 100,
"EchoTrainLength": 3,
"PhaseEncodingSteps": 447,
"AcquisitionMatrixPE": 448,
"ReconMatrixPE": 448,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 260,
"DwellTime": 4.3e-06,
"PhaseEncodingDirection": "j-",
"ImageOrientationPatientDICOM": [
1,
-1.11898e-05,
6.79104e-05,
6.83363e-08,
0.986856,
0.161602 ],
"InPlanePhaseEncodingDirectionDICOM": "COL",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0"
}
Binary file added sub-unf02/anat/sub-unf02_T2star.nii.gz
View file
Open in desktop
Binary file not shown.
67 changes: 67 additions & 0 deletions sub-unf02/anat/sub-unf02_T2w.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
{
"Modality": "MR",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma_fit",
"InstitutionName": "IUGM",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5",
"DeviceSerialNumber": "167006",
"StationName": "MRC35049",
"BodyPartExamined": "SPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "spine_generic",
"SoftwareVersions": "syngo_MR_E11",
"MRAcquisitionType": "3D",
"SeriesDescription": "T2w",
"ProtocolName": "T2w",
"ScanningSequence": "SE",
"SequenceVariant": "SK_SP_OSP",
"ScanOptions": "PFP",
"SequenceName": "_spcR_100",
"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS3D", "DIS2D"],
"SeriesNumber": 3,
"AcquisitionTime": "12:39:2.805000",
"AcquisitionNumber": 1,
"SliceThickness": 0.8,
"SAR": 0.533389,
"EchoTime": 0.12,
"RepetitionTime": 1.5,
"FlipAngle": 120,
"PartialFourier": 1,
"BaseResolution": 320,
"ShimSetting": [
620,
-7194,
-9127,
77,
28,
-20,
-10,
-23 ],
"TxRefAmp": 283.131,
"PhaseResolution": 1,
"PhaseOversampling": 0.8,
"ReceiveCoilName": "Spine_32",
"ReceiveCoilActiveElements": "HC5-7;NC1,2;SP1",
"PulseSequenceDetails": "%SiemensSeq%_tse_vfl",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"PercentPhaseFOV": 100,
"EchoTrainLength": 76,
"PhaseEncodingSteps": 422,
"AcquisitionMatrixPE": 320,
"ReconMatrixPE": 320,
"ParallelReductionFactorInPlane": 3,
"PixelBandwidth": 625,
"DwellTime": 2.5e-06,
"ImageOrientationPatientDICOM": [
0,
1,
4.897e-12,
0,
4.897e-12,
-1 ],
"InPlanePhaseEncodingDirectionDICOM": "COL",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0"
}
Binary file added sub-unf02/anat/sub-unf02_T2w.nii.gz
View file
Open in desktop
Binary file not shown.
64 changes: 64 additions & 0 deletions sub-unf03/anat/sub-unf03_T1w.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,64 @@
{
"Modality": "MR",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma_fit",
"InstitutionName": "IUGM",
"InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5",
"DeviceSerialNumber": "167006",
"StationName": "MRC35049",
"BodyPartExamined": "SPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "spine_generic",
"SoftwareVersions": "syngo_MR_E11",
"MRAcquisitionType": "3D",
"SeriesDescription": "T1w",
"ProtocolName": "T1w",
"ScanningSequence": "GR_IR",
"SequenceVariant": "SK_SP_MP",
"ScanOptions": "IR",
"SequenceName": "_tfl3d1_16",
"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS3D", "DIS2D"],
"SeriesNumber": 2,
"AcquisitionTime": "12:33:7.032500",
"AcquisitionNumber": 1,
"SliceThickness": 1,
"SAR": 0.0601922,
"EchoTime": 0.00372,
"RepetitionTime": 2,
"InversionTime": 1,
"FlipAngle": 9,
"PartialFourier": 1,
"BaseResolution": 320,
"ShimSetting": [
620,
-7194,
-9127,
77,
28,
-20,
-10,
-23 ],
"TxRefAmp": 266.247,
"PhaseResolution": 1,
"ReceiveCoilName": "HeadNeck_64",
"ReceiveCoilActiveElements": "HC1-7;NC1,2",
"PulseSequenceDetails": "%SiemensSeq%_tfl",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"PercentPhaseFOV": 81.25,
"PhaseEncodingSteps": 259,
"AcquisitionMatrixPE": 260,
"ReconMatrixPE": 320,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 150,
"ImageOrientationPatientDICOM": [
0,
1,
0,
-0.00523601,
0,
-0.999986 ],
"InPlanePhaseEncodingDirectionDICOM": "ROW",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0"
}
Binary file added sub-unf03/anat/sub-unf03_T1w.nii.gz
View file
Open in desktop
Binary file not shown.
68 changes: 68 additions & 0 deletions sub-unf03/anat/sub-unf03_T2star.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
{
"Modality": "MR",
"MagneticFieldStrength": 3,
"Manufacturer": "Siemens",
"ManufacturersModelName": "Prisma_fit",
"InstitutionName": "IUGM",
"InstitutionalDepartmentName": "Department",
"InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5",
"DeviceSerialNumber": "167006",
"StationName": "MRC35049",
"BodyPartExamined": "SPINE",
"PatientPosition": "HFS",
"ProcedureStepDescription": "spine_generic",
"SoftwareVersions": "syngo_MR_E11",
"MRAcquisitionType": "2D",
"SeriesDescription": "GRE-ME",
"ProtocolName": "GRE-ME",
"ScanningSequence": "GR",
"SequenceVariant": "SP",
"ScanOptions": "SAT1",
"SequenceName": "_me2d1r3",
"ImageType": ["ORIGINAL", "PRIMARY", "M", "NORM", "DIS2D"],
"SeriesNumber": 8,
"AcquisitionTime": "12:55:4.995000",
"AcquisitionNumber": 1,
"SliceThickness": 5,
"SpacingBetweenSlices": 5,
"SAR": 0.221731,
"EchoTime": 0.014,
"RepetitionTime": 0.6,
"FlipAngle": 30,
"PartialFourier": 1,
"BaseResolution": 448,
"ShimSetting": [
646,
-7447,
-9134,
-960,
-22,
1948,
967,
-33 ],
"TxRefAmp": 280.893,
"PhaseResolution": 1,
"ReceiveCoilName": "HeadNeck_64",
"ReceiveCoilActiveElements": "HC7;NC1,2",
"PulseSequenceDetails": "%SiemensSeq%_medic",
"ConsistencyInfo": "N4_VE11C_LATEST_20160120",
"PercentPhaseFOV": 100,
"EchoTrainLength": 3,
"PhaseEncodingSteps": 447,
"AcquisitionMatrixPE": 448,
"ReconMatrixPE": 448,
"ParallelReductionFactorInPlane": 2,
"PixelBandwidth": 260,
"DwellTime": 4.3e-06,
"PhaseEncodingDirection": "j-",
"ImageOrientationPatientDICOM": [
1,
-1.11898e-05,
6.79104e-05,
6.83363e-08,
0.986856,
0.161602 ],
"InPlanePhaseEncodingDirectionDICOM": "COL",
"ConversionSoftware": "dcm2niix",
"ConversionSoftwareVersion": "v1.0.20180622 (JP2:OpenJPEG) GCC6.1.0"
}
Binary file added sub-unf03/anat/sub-unf03_T2star.nii.gz
View file
Open in desktop
Binary file not shown.
Loading