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lrouhier committed Aug 4, 2020
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12 changes: 6 additions & 6 deletions README.md
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Light-weighted data for testing/tutorial

# Content
* sub-unf01: Bids folder with multiple contrast (T2w,T2star and T1w). Original image from [ivadomed spine generic example repo](https://github.com/ivadomed/data_example_spinegeneric/releases/tag/r20200907) resampled to 1mm isotropic and converted to float32
* derivatives/labels/sub-unf01: derivatives folder with seg-manual labels for all contrasts (from [ivadomed spine generic example repo](https://github.com/ivadomed/data_example_spinegeneric/releases/tag/r20200907)), labels-disc-manual labels for T2w, lesion-manual label for all contrasts, which are manullay created dummy segmentation. All images were resampled to 1mm isotropic and converted to float 32
* bounding\_box.json: dictionnary to test certain function from ivadomed/scripts/bounding\_box.py
* dataset\_description.json: needed file to descript dataset
* participants.csv: table with subject names and potential metadata
* temporary\_results.csv: Used to test ivadomed/scripts/compare\_models.py
* sub-unf01: Bids folder with multiple contrast (T2w,T2star and T1w). Original image from [ivadomed spine generic example repo](https://github.com/ivadomed/data_example_spinegeneric/releases/tag/r20200907) resampled to 1mm isotropic and converted to float32 to reduce repo size. Subject was randomly selected among the available subjects.
* derivatives/labels/sub-unf01: derivatives folder with seg-manual labels for all contrasts (from [ivadomed spine generic example repo](https://github.com/ivadomed/data_example_spinegeneric/releases/tag/r20200907)), labels-disc-manual labels for T2w (manually created with a dummy point), lesion-manual label for all contrasts, which are manullay created dummy segmentation. All images were resampled to 1mm isotropic and converted to float 32.
* bounding\_box.json: dictionnary to test certain function from ivadomed/scripts/bounding\_box.py.
* dataset\_description.json: needed file to descript dataset.
* participants.csv: table with subject names and potential metadata.
* temporary\_results.csv: Used to test ivadomed/scripts/compare\_models.py.
2 changes: 1 addition & 1 deletion dataset_description.json
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"Name": "Spine_generic_example",
"Researcher": "Julien Cohen-Adad",
"Study": "https://spine-generic.readthedocs.io/",
"Version": "URL to distriploy version of the dataset"
"Version": "https://github.com/spine-generic/data-multi-subject/archive/r20200722.zip"
}

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