Skip to content

Issues: iqbal-lab-org/viridian

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 53 Closed
25 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Rename repository to "viridian"
#106 opened May 18, 2023 by martinghunt
More informative error messages for assembly failures
#103 opened Oct 19, 2022 by bede
Handling adapter sequences
#101 opened Oct 11, 2022 by martinghunt
9
Primers contributing to Clean.Tot.cons
#100 opened Oct 11, 2022 by martinghunt
7
Deciding when to exclude primers
#99 opened Oct 11, 2022 by martinghunt
15
Version string in refactor_2022
#97 opened Sep 12, 2022 by jeff-k
Singularity build failing
#95 opened Sep 6, 2022 by martinghunt
4
Update JSON with summary block/new info while preserving tags used by GPAS
#94 opened Sep 2, 2022 by iqbal-lab
2
VCF mods
#93 opened Aug 11, 2022 by iqbal-lab
errors in installation.
#91 opened Jul 26, 2022 by hafizmtalha
1
Enumerate what is happening in the extra indel errors in validation set
#88 opened Jul 20, 2022 by iqbal-lab
Delete temp files by default
#85 opened Jul 20, 2022 by iqbal-lab
keep-bam option should make a coord sorted indexed bam not name-sorted
#84 opened Jul 20, 2022 by iqbal-lab
@jeff-k
JSON log - multiple small things
#83 opened Jul 20, 2022 by iqbal-lab
1 of 3 tasks
@jeff-k
Cope gracefully if passed empty fastq
#78 opened Jul 20, 2022 by iqbal-lab
Ampliseq digests primers future release
#74 opened Jun 21, 2022 by iqbal-lab
Artefact in 0.3.9 to evaluate on 0.9: variants in spike 142 in delta likely due to dropouts
#52 opened May 11, 2022 by iqbal-lab
2
Viridian 0.9 checklist
#50 opened Apr 22, 2022 by iqbal-lab
Provide requisite JSON fields for accurate completeness calculation
#48 opened Mar 8, 2022 by bede
Add terminal newline to final assembly fasta
#42 opened Feb 2, 2022 by bede
add linebreaks to final fasta file
#39 opened Jan 17, 2022 by martinghunt
1
Reasons for masked positions in output json
#32 opened Dec 10, 2021 by martinghunt
Check return code of every subprocess command
#19 opened Nov 22, 2021 by martinghunt
3
fail gracefully when viridian correctly fails to assemble
#5 opened Jun 1, 2021 by jeff-k
2
Add one sample pipeline tests
#3 opened Apr 6, 2021 by martinghunt
ProTip! Add no:assignee to see everything that’s not assigned.