obo-parser

A java parser for obo file format as provided by unipathway

Release

• obo-parser-0.2.1

Download

• Users: get current stable release
• Developers: get it from git

$ git clone https://github.com/institut-de-genomique/obo-parser.git

Installation

Go to obo-parser directory and launch maven to install and test it.

$ cd obo-parser
$ gradle install

Usage

Parser parser = new Parser( "unipathway.obo" );
UPA    term1  = (UPA) parser.getTerm("UPa:UPA00033");
ULS    term2  = (ULS) parser.getTerm("UPa:ULS00003");

All Objects inherit from class Term.

TermRelations describes entities which contains some sub-entities, like: UPA, ULS, UER, UPA, UCR.

If you need to specialize these definitions you can extends these sub-entities (UPA, ULS, UER, UCR) .

Build Information

Travis Log: here

LICENSE

Open source approved by the Free Software Foundation: CeCILL-C