This repository contains all the data and scripts used to produce the main figures of the following article:
Pervasive tandem duplications and convergent evolution shape coral genomes
Benjamin Noel, France Denoeud, Alice Rouan, Carol Buitrago-López, Laura Capasso, Julie Poulain, Emilie Boissin, Mélanie Pousse, Corinne Da Silva, Arnaud Couloux, Eric Armstrong, Quentin Carradec, Corinne Cruaud, Karine Labadie, Julie Lê-Hoang, Sylvie Tambutté, Valérie Barbe, Clémentine Moulin, Guillaume Bourdin, Guillaume Iwankow, Sarah Romac, Sylvain Agostini, Bernard Banaigs, Emmanuel Boss, Chris Bowler, Colomban de Vargas, Eric Douville, J. Michel Flores, Didier Forcioli, Paola Furla, Pierre E. Galand, Fabien Lombard, Stéphane Pesant, Stéphanie Reynaud, Matthew B. Sullivan, Shinichi Sunagawa, Olivier P. Thomas, Romain Troublé, Rebecca Vega Thurber, Denis Allemand, Serge Planes, Eric Gilson, Didier Zoccola, Patrick Wincker, Christian R. Voolstra & Jean-Marc Aury
doi: https://doi.org/10.1186/s13059-023-02960-7
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02960-7
The genome assembly and annotation are freely available at http://www.genoscope.cns.fr/corals
All the sequencing data are available in the European Nucleotide Archive https://www.ebi.ac.uk/ena/browser/view/PRJEB51539