Use BiocBaseUtils from BioC instead of GitHub (#191)

Fixes stable RNA-Seq deployment
insightsengineering · Jan 23, 2025 · 6706088 · 6706088
1 parent bf70f86
commit 6706088
Showing 1 changed file with 9 additions and 80 deletions.
diff --git a/RNA-seq/renv.lock b/RNA-seq/renv.lock
@@ -54,19 +54,9 @@
     },
     "BiocBaseUtils": {
       "Package": "BiocBaseUtils",
-      "Version": "1.9.0",
-      "Source": "GitHub",
-      "RemoteType": "github",
-      "RemoteHost": "api.github.com",
-      "RemoteRepo": "BiocBaseUtils",
-      "RemoteUsername": "Bioconductor",
-      "RemoteSha": "d643df4e5d25708002ed5b02e8fc6a04db69d28c",
-      "Requirements": [
-        "R",
-        "methods",
-        "utils"
-      ],
-      "Hash": "77ab4922879e7ebf92610da88f4e89e1"
+      "Version": "1.6.0",
+      "Source": "Repository",
+      "Repository": "BioCsoft"
     },
     "BiocFileCache": {
       "Package": "BiocFileCache",
@@ -1624,45 +1614,10 @@
       "Source": "GitHub",
       "RemoteType": "github",
       "RemoteHost": "api.github.com",
-      "RemoteRepo": "hermes",
       "RemoteUsername": "insightsengineering",
-      "RemoteSha": "acd1bf0c10a48975607e1cca8d999bb219efe40f",
-      "Requirements": [
-        "Biobase",
-        "BiocGenerics",
-        "ComplexHeatmap",
-        "DESeq2",
-        "EnvStats",
-        "GenomicRanges",
-        "IRanges",
-        "MultiAssayExperiment",
-        "R",
-        "R6",
-        "Rdpack",
-        "S4Vectors",
-        "SummarizedExperiment",
-        "assertthat",
-        "biomaRt",
-        "checkmate",
-        "circlize",
-        "dplyr",
-        "edgeR",
-        "forcats",
-        "ggfortify",
-        "ggplot2",
-        "ggrepel",
-        "lifecycle",
-        "limma",
-        "magrittr",
-        "matrixStats",
-        "methods",
-        "purrr",
-        "rlang",
-        "stats",
-        "tidyr",
-        "utils"
-      ],
-      "Hash": "b48801514edb2b09bbe206548167af3f"
+      "RemoteRepo": "hermes",
+      "RemoteRef": "main",
+      "RemoteSha": "acd1bf0c10a48975607e1cca8d999bb219efe40f"
     },
     "highr": {
       "Package": "highr",
@@ -2949,36 +2904,10 @@
       "Source": "GitHub",
       "RemoteType": "github",
       "RemoteHost": "api.github.com",
-      "RemoteRepo": "teal.modules.hermes",
       "RemoteUsername": "insightsengineering",
-      "RemoteSha": "f91610751bb48e8b19c6ce0ad785f3e47c81c4be",
-      "Requirements": [
-        "DT",
-        "MultiAssayExperiment",
-        "R",
-        "S4Vectors",
-        "SummarizedExperiment",
-        "checkmate",
-        "edgeR",
-        "forcats",
-        "ggplot2",
-        "hermes",
-        "lifecycle",
-        "rtables",
-        "shiny",
-        "shinyRadioMatrix",
-        "shinyWidgets",
-        "stats",
-        "stringr",
-        "teal",
-        "teal.data",
-        "teal.logger",
-        "teal.reporter",
-        "teal.widgets",
-        "tern",
-        "utils"
-      ],
-      "Hash": "39fa6c32ea411fcc13676e66d0d5aa00"
+      "RemoteRepo": "teal.modules.hermes",
+      "RemoteRef": "main",
+      "RemoteSha": "f91610751bb48e8b19c6ce0ad785f3e47c81c4be"
     },
     "teal.reporter": {
       "Package": "teal.reporter",