updated dge.ipynb tutorial

infocusp · Sep 12, 2024 · 8a19e0e · 8a19e0e
1 parent ec67fbc
commit 8a19e0e
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/tutorials/analysis/differential_gene_expression/dge.ipynb b/tutorials/analysis/differential_gene_expression/dge.ipynb
@@ -482,6 +482,8 @@
     "\n",
     "     ![Alt text](tutorial_config.png)\n",
     "\n",
+    "- In the terminal, type the following command after updating the ```/path/to/scaLR``` repository.\n",
+    "    - ```export PYTHONPATH=\"${PYTHONPATH}:/path/to/scaLR\"```\n",
     "\n",
     "- Run either of the commands below in the terminal as per the ```dge_type``` and ```parameters```:\n",
     "    - ```nohup /usr/bin/time --verbose python -u dge_pseudobulk_main.py --config dge_config.yaml >nohup_dge_pbk 2>&1 &``` \n",