Migrate from circleci to github actions #16
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| pre_commit_check: | |
| name: Pre-Commit Check | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: tiktorch-server-env | |
| environment-file: environment.yml | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: Run Pre-Commit | |
| run: | | |
| echo $BRANCH_NAME | |
| echo ${{ github.event.pull_request.base.ref }} | |
| echo ${{ github.event.pull_request.head.sha }} | |
| git fetch origin | |
| pre-commit run --from-ref origin/${{ github.event.pull_request.base.ref }} --to-ref ${{ github.event.pull_request.head.sha }} | |
| conda-noarch-build: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| version: ${{ steps.version.outputs.version }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: install common conda dependencies | |
| run: mamba install -n base -c conda-forge conda-build setuptools_scm -y | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ runner.os }}-packages-${{ hashFiles('conda-recipe/meta.yaml') }} | |
| - id: version | |
| run: | | |
| vers=$( python setup.py --version ) | |
| echo "version=${vers}" >> $GITHUB_OUTPUT | |
| - name: Linux Conda Build Test | |
| run: | | |
| mkdir -p ./pkgs/noarch | |
| conda build -c conda-forge conda-recipe --no-test --output-folder ./pkgs | |
| echo "Current dir" | |
| pwd | |
| echo "ls pkgs" | |
| ls ./pkgs | |
| echo "no arch dir" | |
| ls ./pkgs/noarch | |
| test-conda-packages: | |
| needs: [conda-noarch-build] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TIKTORCH_PACKAGE_NAME: tiktorch-${{ needs.conda-noarch-build.outputs.version }}.tar.bz2 | |
| steps: | |
| # Use GNU tar instead of BSD tar on Windows | |
| - name: "Use GNU tar instead of BSD tar" | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd | |
| run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%" | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| channel-priority: strict | |
| miniforge-variant: Miniforge3 | |
| - name: install common conda dependencies | |
| run: mamba install -n base -c conda-forge conda-build setuptools_scm -y | |
| - name: Cache Conda Packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ runner.os }}-packages-${{ hashFiles('conda-recipe/meta.yaml') }} | |
| enableCrossOsArchive: true | |
| - name: Linux Test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: | | |
| ls ./pkgs/noarch | |
| pwd | |
| conda build --test --override-channels \ | |
| -c ./pkgs -c pytorch -c ilastik-forge -c conda-forge \ | |
| ./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | |
| - name: macOS Test | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: | | |
| conda build --test --override-channels \ | |
| -c ./pkgs -c pytorch -c ilastik-forge -c conda-forge \ | |
| ./pkgs/noarch/${TIKTORCH_PACKAGE_NAME} | |
| - name: Windows Test | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd /C CALL {0} | |
| run: | | |
| conda build --test --override-channels ^ | |
| -c .\pkgs -c pytorch -c ilastik-forge -c conda-forge ^ | |
| .\pkgs\noarch\%TIKTORCH_PACKAGE_NAME% |