Use pre-commit to invoke ruff, mypy #1092
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| name: Test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| schedule: | |
| - cron: "0 5 * * *" | |
| # Cancel previous runs that have not completed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| # See description in lint.yml | |
| depth: 100 | |
| jobs: | |
| pytest: | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| python-version: | |
| - "3.7" # Earliest version supported by ixmp | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" # Latest supported by ixmp | |
| # commented: force a specific version of pandas, for e.g. pre-release | |
| # testing | |
| # pandas-version: | |
| # - "" | |
| # - "==2.0.0rc0" | |
| exclude: [ ] | |
| # # Specific version combinations that are invalid, e.g. pandas 2.0 | |
| # # requires Python >= 3.8 | |
| # - python-version: "3.7" | |
| # pandas-version: "==2.0.0rc0" | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| # commented: use with "pandas-version" in the matrix, above | |
| # name: ${{ matrix.os }}-py${{ matrix.python-version }}-pandas${{ matrix.pandas-version }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| - name: Fetch tags (for setuptools-scm) | |
| run: git fetch --tags --depth=${{ env.depth }} | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: "**/pyproject.toml" | |
| - uses: ts-graphviz/[email protected] | |
| with: | |
| macos-skip-brew-update: true | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: '4.2.3' | |
| - name: Cache GAMS installer and R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| gams | |
| ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-R${{ steps.setup-r.outputs.installed-r-version }} | |
| restore-keys: | | |
| ${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: 25.1.1 | |
| - name: Set RETICULATE_PYTHON | |
| # Use the environment variable set by the setup-python action, above. | |
| run: echo "RETICULATE_PYTHON=$pythonLocation" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Install Python package and dependencies | |
| # [docs] contains [tests], which contains [report,tutorial] | |
| run: | | |
| pip install .[docs] | |
| # commented: use with "pandas-version" in the matrix, above | |
| # pip install --upgrade pandas${{ matrix.pandas-version }} | |
| - name: TEMPORARY Work around iiasa/ixmp#463 | |
| if: matrix.python-version != '3.11' | |
| run: pip install "JPype1 != 1.4.1" | |
| - name: Install R dependencies and tutorial requirements | |
| run: | | |
| install.packages(c("remotes", "Rcpp")) | |
| remotes::install_cran( | |
| c("IRkernel", "reticulate"), | |
| dependencies = TRUE, | |
| # force = TRUE, | |
| ) | |
| IRkernel::installspec() | |
| # commented: for debugging | |
| # print(reticulate::py_config()) | |
| # reticulate::py_run_string("import os; print(os.environ)") | |
| shell: Rscript {0} | |
| - name: Run test suite using pytest | |
| run: pytest ixmp -m "not performance" --verbose -rA --cov-report=xml --color=yes | |
| - name: Test documentation build using Sphinx | |
| env: | |
| # For pull_request triggers, GitHub creates a temporary merge commit | |
| # with a hash that does not match the head of the branch. Tell it which | |
| # branch to use. | |
| SPHINXOPTS: -D linkcode_github_remote_head=${{ github.head_ref }} | |
| run: make --directory=doc html | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v3 | |
| pre-commit: | |
| name: Code quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| - uses: pre-commit/[email protected] |