Test #1581
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name: Test | |
on: | |
pull_request: | |
branches: [ main ] | |
schedule: | |
- cron: "0 5 * * *" | |
# Cancel previous runs that have not completed | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
env: | |
depth: 100 | |
jobs: | |
pytest: | |
strategy: | |
matrix: | |
os: | |
- macos-13 | |
- macos-latest | |
- ubuntu-latest | |
- windows-latest | |
python-version: | |
- "3.8" # Earliest version supported by ixmp | |
- "3.9" | |
- "3.10" | |
- "3.11" | |
- "3.12" # Latest supported by ixmp | |
gams-version: | |
# Version used until 2024-07; disabled | |
# - 25.1.1 | |
# First version including a macOS arm64 distribution | |
- 43.4.1 | |
# commented: force a specific version of pandas, for e.g. pre-release | |
# testing | |
# pandas-version: | |
# - "" | |
# - "==2.0.0rc0" | |
exclude: | |
# Specific version combinations that are invalid / not to be used | |
# No arm64 distribution for this version of GAMS | |
# - { os: macos-latest, gams-version: 25.1.1} | |
# No arm64 distributions of JPype for these Pythons | |
- { os: macos-latest, python-version: "3.8" } | |
- { os: macos-latest, python-version: "3.9" } | |
# Redundant with macos-latest | |
- { os: macos-13, python-version: "3.10" } | |
- { os: macos-13, python-version: "3.11" } | |
- { os: macos-13, python-version: "3.12" } | |
# Example: pandas 2.0 requires Python >= 3.8 | |
# - { python-version: "3.7", pandas-version: "==2.0.0rc0" } | |
fail-fast: false | |
runs-on: ${{ matrix.os }} | |
name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
# commented: use with "pandas-version" in the matrix, above | |
# name: ${{ matrix.os }}-py${{ matrix.python-version }}-pandas${{ matrix.pandas-version }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: ${{ env.depth }} | |
fetch-tags: true | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: pip | |
cache-dependency-path: "**/pyproject.toml" | |
- uses: ts-graphviz/setup-graphviz@v2 | |
# TEMPORARY Work around ts-graphviz/setup-graphviz#630 | |
if: ${{ ! startswith(matrix.os, 'macos-') }} | |
- uses: r-lib/actions/setup-r@v2 | |
id: setup-r | |
with: | |
r-version: '4.2.3' | |
- name: Cache GAMS installer and R packages | |
uses: actions/cache@v4 | |
with: | |
path: | | |
gams | |
${{ env.R_LIBS_USER }} | |
key: ${{ matrix.os }}-R${{ steps.setup-r.outputs.installed-r-version }} | |
restore-keys: | | |
${{ matrix.os }}- | |
- uses: iiasa/actions/setup-gams@main | |
with: | |
version: ${{ matrix.gams-version }} | |
license: ${{ secrets.GAMS_LICENSE }} | |
- name: Set RETICULATE_PYTHON | |
# Use the environment variable set by the setup-python action, above. | |
run: echo "RETICULATE_PYTHON=$pythonLocation" >> $GITHUB_ENV | |
shell: bash | |
- name: Install Python package and dependencies | |
# [docs] contains [tests], which contains [report,tutorial] | |
run: | | |
pip install .[docs] | |
# commented: use with "pandas-version" in the matrix, above | |
# pip install --upgrade pandas${{ matrix.pandas-version }} | |
# TEMPORARY Work around hgrecco/pint#2007; | |
# see https://github.com/iiasa/ixmp/issues/534 | |
pip install "pint != 0.24.0" "numpy < 2" | |
- name: Install R dependencies and tutorial requirements | |
run: | | |
install.packages(c("remotes", "Rcpp")) | |
remotes::install_cran( | |
c("IRkernel", "reticulate"), | |
dependencies = TRUE, | |
# force = TRUE, | |
) | |
IRkernel::installspec() | |
# commented: for debugging | |
# print(reticulate::py_config()) | |
# reticulate::py_run_string("import os; print(os.environ)") | |
shell: Rscript {0} | |
- name: Run test suite using pytest | |
# FIXME: Use --numprocesses=auto once flaky tests are fixed | |
run: | | |
pytest ixmp \ | |
-m "not performance" \ | |
--color=yes -rA --verbose \ | |
--cov-report=xml \ | |
--numprocesses=1 | |
shell: bash | |
- name: Upload test coverage to Codecov.io | |
uses: codecov/codecov-action@v4 | |
# FIXME Limit runtime until | |
# https://github.com/codecov/codecov-action/issues/1316 is resolved | |
timeout-minutes: 1 | |
continue-on-error: true | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} # required | |
pre-commit: | |
name: Code quality | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: { python-version: "3.12" } | |
- name: Force recreation of pre-commit virtual environment for mypy | |
if: github.event_name == 'schedule' | |
run: gh cache list -L 999 | cut -f2 | grep pre-commit | xargs -I{} gh cache delete "{}" || true | |
env: { GH_TOKEN: "${{ github.token }}" } | |
- uses: pre-commit/[email protected] |