Results with all problems

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diff --git a/revdep/README.md b/revdep/README.md
@@ -7,3 +7,27 @@
 |[influential](problems.md#influential)|2.2.8   |       |__+2__  |     |
 |[statGraph](problems.md#statgraph)|0.5.0   |__+1__ |        |     |
 
+## All (19)
+
+|package           |version |error  |warning |note |
+|:-----------------|:-------|:------|:-------|:----|
+|[causaleffect](problems.md#causaleffect)|1.3.15  |       |1       |     |
+|centiserve        |1.0.0   |       |        |     |
+|cfid              |0.1.7   |       |        |     |
+|[CINNA](problems.md#cinna)|1.2.2   |       |        |1    |
+|[dosearch](problems.md#dosearch)|1.0.8   |       |        |2    |
+|fanovaGraph       |1.5     |       |        |     |
+|[ggnetwork](problems.md#ggnetwork)|0.5.12  |       |        |1    |
+|[inferCSN](problems.md#infercsn)|0.99.8  |       |        |1    |
+|[influential](problems.md#influential)|2.2.8   |       |__+2__  |     |
+|intergraph        |2.0-3   |       |        |     |
+|[markovchain](problems.md#markovchain)|0.9.5   |1      |        |3    |
+|nosoi             |1.1.0   |       |        |     |
+|[pcalg](problems.md#pcalg)|2.7-9   |       |        |3    |
+|[phyloseqGraphTest](problems.md#phyloseqgraphtest)|0.1.0   |       |        |2    |
+|rgraph6           |2.0-2   |       |        |     |
+|riverconn         |0.3.28  |       |        |     |
+|[shazam](problems.md#shazam)|1.2.0   |       |1       |     |
+|[statGraph](problems.md#statgraph)|0.5.0   |__+1__ |        |     |
+|TreeDimensionTest |0.0.2   |       |        |     |
+
diff --git a/revdep/problems.md b/revdep/problems.md
@@ -1,3 +1,141 @@
+# causaleffect
+
+<details>
+
+* Version: 1.3.15
+* GitHub: https://github.com/santikka/causaleffect
+* Source code: https://github.com/cran/causaleffect
+* Date/Publication: 2022-07-14 09:10:05 UTC
+* Number of recursive dependencies: 17
+
+Run `revdepcheck::cloud_details(, "causaleffect")` for more info
+
+</details>
+
+## In both
+
+*   checking re-building of vignette outputs ... WARNING
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘causaleffect.ltx’ using tex
+    Error: processing vignette 'causaleffect.ltx' failed with diagnostics:
+    Running 'texi2dvi' on 'causaleffect.ltx' failed.
+    LaTeX errors:
+    ! LaTeX Error: File `thumbpdf.sty' not found.
+    
+    Type X to quit or <RETURN> to proceed,
+    or enter new name. (Default extension: sty)
+    
+    ...
+    l.16 \usepackage
+                    {csquotes}^^M
+    !  ==> Fatal error occurred, no output PDF file produced!
+    --- failed re-building ‘simplification.ltx’
+    
+    SUMMARY: processing the following files failed:
+      ‘causaleffect.ltx’ ‘simplification.ltx’
+    
+    Error: Vignette re-building failed.
+    Execution halted
+    ```
+
+# CINNA
+
+<details>
+
+* Version: 1.2.2
+* GitHub: NA
+* Source code: https://github.com/cran/CINNA
+* Date/Publication: 2023-08-08 16:40:02 UTC
+* Number of recursive dependencies: 149
+
+Run `revdepcheck::cloud_details(, "CINNA")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘circlize’ ‘utils’
+      All declared Imports should be used.
+    ```
+
+# dosearch
+
+<details>
+
+* Version: 1.0.8
+* GitHub: NA
+* Source code: https://github.com/cran/dosearch
+* Date/Publication: 2021-08-19 16:40:02 UTC
+* Number of recursive dependencies: 18
+
+Run `revdepcheck::cloud_details(, "dosearch")` for more info
+
+</details>
+
+## In both
+
+*   checking C++ specification ... NOTE
+    ```
+      Specified C++11: please drop specification unless essential
+    ```
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  6.5Mb
+      sub-directories of 1Mb or more:
+        libs   6.2Mb
+    ```
+
+# ggnetwork
+
+<details>
+
+* Version: 0.5.12
+* GitHub: https://github.com/briatte/ggnetwork
+* Source code: https://github.com/cran/ggnetwork
+* Date/Publication: 2023-03-06 20:00:02 UTC
+* Number of recursive dependencies: 75
+
+Run `revdepcheck::cloud_details(, "ggnetwork")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘sna’ ‘utils’
+      All declared Imports should be used.
+    ```
+
+# inferCSN
+
+<details>
+
+* Version: 0.99.8
+* GitHub: https://github.com/mengxu98/inferCSN
+* Source code: https://github.com/cran/inferCSN
+* Date/Publication: 2023-12-04 05:00:02 UTC
+* Number of recursive dependencies: 100
+
+Run `revdepcheck::cloud_details(, "inferCSN")` for more info
+
+</details>
+
+## In both
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is 35.6Mb
+      sub-directories of 1Mb or more:
+        libs  34.6Mb
+    ```
+
 # influential
 
 <details>
@@ -35,6 +173,186 @@ Run `revdepcheck::cloud_details(, "influential")` for more info
         Position: 1 Code: ... Docs: incidence
     ```
 
+# markovchain
+
+<details>
+
+* Version: 0.9.5
+* GitHub: https://github.com/spedygiorgio/markovchain
+* Source code: https://github.com/cran/markovchain
+* Date/Publication: 2023-09-24 09:20:02 UTC
+* Number of recursive dependencies: 105
+
+Run `revdepcheck::cloud_details(, "markovchain")` for more info
+
+</details>
+
+## In both
+
+*   checking re-building of vignette outputs ... ERROR
+    ```
+    Error(s) in re-building vignettes:
+      ...
+    --- re-building ‘an_introduction_to_markovchain_package.Rmd’ using rmarkdown
+    Error: processing vignette 'an_introduction_to_markovchain_package.Rmd' failed with diagnostics:
+    pandoc version 2.7 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
+    --- failed re-building ‘an_introduction_to_markovchain_package.Rmd’
+    
+    --- re-building ‘gsoc_2017_additions.Rmd’ using rmarkdown
+    --- finished re-building ‘gsoc_2017_additions.Rmd’
+    
+    ...
+    Error: processing vignette 'higher_order_markov_chains.Rmd' failed with diagnostics:
+    pandoc version 2.7 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
+    --- failed re-building ‘higher_order_markov_chains.Rmd’
+    
+    SUMMARY: processing the following files failed:
+      ‘an_introduction_to_markovchain_package.Rmd’
+      ‘higher_order_markov_chains.Rmd’
+    
+    Error: Vignette re-building failed.
+    Execution halted
+    ```
+
+*   checking package dependencies ... NOTE
+    ```
+    Package which this enhances but not available for checking: ‘etm’
+    ```
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is 24.0Mb
+      sub-directories of 1Mb or more:
+        libs  21.9Mb
+    ```
+
+*   checking for GNU extensions in Makefiles ... NOTE
+    ```
+    GNU make is a SystemRequirements.
+    ```
+
+# pcalg
+
+<details>
+
+* Version: 2.7-9
+* GitHub: NA
+* Source code: https://github.com/cran/pcalg
+* Date/Publication: 2023-09-26 05:40:03 UTC
+* Number of recursive dependencies: 58
+
+Run `revdepcheck::cloud_details(, "pcalg")` for more info
+
+</details>
+
+## In both
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is 20.0Mb
+      sub-directories of 1Mb or more:
+        data   2.1Mb
+        libs  14.6Mb
+    ```
+
+*   checking Rd cross-references ... NOTE
+    ```
+    Packages unavailable to check Rd xrefs: ‘combinat’, ‘unifDAG’
+    ```
+
+*   checking re-building of vignette outputs ... NOTE
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘vignette2018.Rnw’ using Sweave
+    Loading required package: Rgraphviz
+    Loading required package: graph
+    Loading required package: BiocGenerics
+    
+    Attaching package: 'BiocGenerics'
+    
+    The following objects are masked from 'package:stats':
+    
+    ...
+    l.179   \RequirePackage{grfext}\relax
+                                         ^^M
+    !  ==> Fatal error occurred, no output PDF file produced!
+    --- failed re-building 'vignette2018.Rnw'
+    
+    SUMMARY: processing the following file failed:
+      'vignette2018.Rnw'
+    
+    Error: Vignette re-building failed.
+    Execution halted
+    ```
+
+# phyloseqGraphTest
+
+<details>
+
+* Version: 0.1.0
+* GitHub: https://github.com/jfukuyama/phyloseqGraphTest
+* Source code: https://github.com/cran/phyloseqGraphTest
+* Date/Publication: 2020-02-07 16:30:02 UTC
+* Number of recursive dependencies: 95
+
+Run `revdepcheck::cloud_details(, "phyloseqGraphTest")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespace in Imports field not imported from: ‘intergraph’
+      All declared Imports should be used.
+    ```
+
+*   checking LazyData ... NOTE
+    ```
+      'LazyData' is specified without a 'data' directory
+    ```
+
+# shazam
+
+<details>
+
+* Version: 1.2.0
+* GitHub: NA
+* Source code: https://github.com/cran/shazam
+* Date/Publication: 2023-10-02 18:50:02 UTC
+* Number of recursive dependencies: 128
+
+Run `revdepcheck::cloud_details(, "shazam")` for more info
+
+</details>
+
+## In both
+
+*   checking re-building of vignette outputs ... WARNING
+    ```
+    Error(s) in re-building vignettes:
+    --- re-building ‘Baseline-Vignette.Rmd’ using rmarkdown
+    tlmgr update --all --self
+    Can't locate mktexlsr.pl in @INC (@INC contains: /opt/TinyTeX/tlpkg /opt/TinyTeX/texmf-dist/scripts/texlive /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.30.0 /usr/local/share/perl/5.30.0 /usr/lib/x86_64-linux-gnu/perl5/5.30 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.30 /usr/share/perl/5.30 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at /usr/bin/fmtutil line 26.
+    BEGIN failed--compilation aborted at /usr/bin/fmtutil line 28.
+    texlive-scripts package not found (?!), skipping revision consistency check
+    tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified)
+    tlmgr install: package already present: l3backend
+    ! LaTeX Error: Mismatched LaTeX support files detected.
+    (LaTeX)        Loading 'l3backend-pdftex.def' aborted!
+    ...
+    LaTeX failed to compile /tmp/workdir/shazam/new/shazam.Rcheck/vign_test/shazam/vignettes/Targeting-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Targeting-Vignette.log for more info.
+    --- failed re-building ‘Targeting-Vignette.Rmd’
+    
+    SUMMARY: processing the following files failed:
+      ‘Baseline-Vignette.Rmd’ ‘DistToNearest-Vignette.Rmd’
+      ‘Mutation-Vignette.Rmd’ ‘Shmulate-Vignette.Rmd’
+      ‘Targeting-Vignette.Rmd’
+    
+    Error: Vignette re-building failed.
+    Execution halted
+    ```
+
 # statGraph
 
 <details>