Update documentation

igmk · Nov 15, 2024 · 922bd61 · 922bd61
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: dd59f52f62b3dc87aa96b0df0fda6b96
+config: ab84c5c0652a48f1b3637321fe4a53c5
 tags: 645f666f9bcd5a90fca523b33c5a78b7
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diff --git a/_sources/datasets.ipynb b/_sources/datasets.ipynb
@@ -379,7 +379,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.6"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/bacardi.ipynb b/_sources/datasets/halo/bacardi.ipynb
@@ -22,11 +22,35 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "ename": "NameError",
+     "evalue": "name 'os' is not defined",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mNameError\u001b[0m                                 Traceback (most recent call last)",
+      "Cell \u001b[0;32mIn[1], line 5\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mdotenv\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m load_dotenv\n\u001b[1;32m      3\u001b[0m load_dotenv()\n\u001b[0;32m----> 5\u001b[0m ac3cloud_username \u001b[38;5;241m=\u001b[39m \u001b[43mos\u001b[49m\u001b[38;5;241m.\u001b[39menviron[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mAC3_USER\u001b[39m\u001b[38;5;124m'\u001b[39m]\n\u001b[1;32m      6\u001b[0m ac3cloud_password \u001b[38;5;241m=\u001b[39m os\u001b[38;5;241m.\u001b[39menviron[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mAC3_PASSWORD\u001b[39m\u001b[38;5;124m'\u001b[39m]\n\u001b[1;32m      8\u001b[0m credentials \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mdict\u001b[39m(user\u001b[38;5;241m=\u001b[39mac3cloud_username, password\u001b[38;5;241m=\u001b[39mac3cloud_password)\n",
+      "\u001b[0;31mNameError\u001b[0m: name 'os' is not defined"
+     ]
+    }
+   ],
    "source": [
     "import os\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -72,12 +96,15 @@
        "['BAHAMAS',\n",
        " 'BACARDI',\n",
        " 'DROPSONDES',\n",
+       " 'DROPSONDES_GRIDDED',\n",
        " 'GPS_INS',\n",
        " 'HAMP_KV',\n",
        " 'HAMP_11990',\n",
        " 'HAMP_183',\n",
        " 'HAMP_MIRA',\n",
-       " 'SMART']"
+       " 'KT19',\n",
+       " 'SMART',\n",
+       " 'AMSR2_SIC']"
       ]
      },
      "execution_count": 4,
@@ -132,15 +159,7 @@
    "metadata": {
     "tags": []
    },
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "Invalid MIT-MAGIC-COOKIE-1 key"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "gps_ins = cat['HALO-AC3']['HALO']['GPS_INS'][flight](user=ac3cloud_username,password=ac3cloud_password).to_dask()\n",
     "\n",
@@ -165,7 +184,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/bahamas.ipynb b/_sources/datasets/halo/bahamas.ipynb
@@ -20,13 +20,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
     "import os\n",
+    "\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -165,7 +178,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/dropsondes.ipynb b/_sources/datasets/halo/dropsondes.ipynb
@@ -20,13 +20,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
     "import os\n",
+    "\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -165,7 +178,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.6"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/gps_ins.ipynb b/_sources/datasets/halo/gps_ins.ipynb
@@ -22,8 +22,21 @@
    "outputs": [],
    "source": [
     "import os\n",
+    "\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -114,7 +127,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.6"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/halo-ac3_data.ipynb b/_sources/datasets/halo/halo-ac3_data.ipynb
@@ -38,7 +38,6 @@
     "from ipyleaflet import Polyline, Map, basemaps, basemap_to_tiles\n",
     "from ipywidgets import Layout\n",
     "from simplification.cutil import simplify_coords_idx\n",
-    "import os\n",
     "%matplotlib inline"
    ]
   },
@@ -57,10 +56,21 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "import os\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
     "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
     "\n",
-    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)"
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -198,20 +208,6 @@
     "When we use caching, we do not need to download the data every time we call the script."
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 8,
-   "id": "641b3d0d-91c2-41aa-be63-732a4859757b",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "# local caching\n",
-    "kwds = {'simplecache': dict(\n",
-    "    cache_storage='/work/data/halo-ac3', \n",
-    "    same_names=True\n",
-    ")}"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": 9,
@@ -534,7 +530,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.6"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/hamp_radar.ipynb b/_sources/datasets/halo/hamp_radar.ipynb
@@ -20,13 +20,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
     "import os\n",
+    "\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -285,7 +298,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,

diff --git a/_sources/datasets/halo/hamp_radiometer.ipynb b/_sources/datasets/halo/hamp_radiometer.ipynb
@@ -20,13 +20,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
     "import os\n",
+    "\n",
+    "from dotenv import load_dotenv\n",
+    "\n",
+    "load_dotenv()\n",
+    "\n",
     "ac3cloud_username = os.environ['AC3_USER']\n",
-    "ac3cloud_password = os.environ['AC3_PASSWORD']"
+    "ac3cloud_password = os.environ['AC3_PASSWORD']\n",
+    "\n",
+    "credentials = dict(user=ac3cloud_username, password=ac3cloud_password)\n",
+    "\n",
+    "# local caching\n",
+    "kwds = {'simplecache': dict(\n",
+    "    cache_storage=os.environ['INTAKE_CACHE'], \n",
+    "    same_names=True\n",
+    ")}"
    ]
   },
   {
@@ -285,7 +298,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.10.12"
   }
  },
  "nbformat": 4,