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[WIP] Fractal with bconds#486

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pdziekan wants to merge 133 commits intoigfuw:masterigfuw/libmpdataxx:masterfrom pdziekan:fractal_with_bcondspdziekan/libmpdataxx:fractal_with_bcondsCopy head branch name to clipboard

+3,116-651

Commits

Commits on Feb 28, 2022

• sgs_fra solver declaration

  pdziekan

  committed
  c5a37c0

Commits on Mar 1, 2022

• wip on fractal refinement

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  f915875

Commits on Mar 2, 2022

• working allocation of refined arrays

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  c1b497d

• refined grid size dependant on the number of fractal reconstructions

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  487b356

• fix refine_grid_size()

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  1ad25f3

• mem_factory function

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  f3885aa

• consitional choice of shmem / shmem_refined

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  47348d7

Commits on Mar 3, 2022

• consitional choice of shmem / shmem_refined - upgraded

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  a6e8b43

• working shmem / shmem_recon stuff? (openmp and 3d only for now)

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  be93f45

• solver_family protected again + solver doesnt inherit from family tag

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  963be45

• use mem_factory in all concurr types

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  d361919

• second ctor for shmem_refined in mem_t in each concurr type

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  2d956d1

• alloc tmp with custom grid size in 1d and 2d

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  7d54514

Commits on Mar 7, 2022

• hdf5: store refined data

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  3f81179

• xmf: record refined aux

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  71f4d70

• hdf5: store refined X,Y,Z TODO: make it conditional

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  0fe0730

• xmf writer: add reference writing

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  caaffb4

• xmf: write refined data using separate xmf_writer

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  1beeef1

Commits on Mar 15, 2022

• Merge branch 'master' of github.com:igfuw/libmpdataxx into fractal

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  cb7d541

Commits on Mar 16, 2022

• fix grid size refinement strategy

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  54e392b

• wip on refinement: fixed positions in output, added refined ijk

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  fb08f52

Commits on Mar 17, 2022

• refined fields without halos

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  e9984b5

• refined grid: halo of n_ref/2

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  3f540a9

• Revert "refined grid: halo of n_ref/2"

  Show description for 87df456
  pdziekan

  committed
  87df456

• wip on refined interpolation

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  committed
  aba74b3

Commits on Mar 18, 2022

• wip on interpolation

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  6aab97c

• interpolation: hardocode two iterations, still no interpolation at sharedmem and MPI boundaries

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  committed
  e622df1

Commits on Mar 21, 2022

• wip on interpolation at edges

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  committed
  669194a

Commits on Mar 31, 2022

• shmem_ref: require grid size that makes fractal reconstruction easier

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  fe9d8f8

• refinement: wip

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  275789c

Commits on Apr 1, 2022

• refinement: fix interpolation for distmem!

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  committed
  e5213f1

Commits on Apr 19, 2022

• working interpolation of scalars

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  5225da2

• pbl: refine u too

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  c7eb23a

Commits on Apr 20, 2022

• fra rec wip

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  b0fa3f3

• fra rec in 3 steps:

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  94af7cb

• fra rec wip

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  2701722

Commits on Apr 21, 2022

• fra rec wip

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  93294f2

Commits on Apr 25, 2022

• fra rec wip

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  9866e7c

• new ref ranges working interpolation

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  ab01ef0

• cleanup

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  c620de4

• cleanup + wip on reconstruction

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  eeaba3f

Commits on Apr 26, 2022

• working reconstruction? at least for 1 iteration

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  34337eb

• working recon, at least 1 iter

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  6c06aed

Commits on Apr 27, 2022

• working recon

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  42c26ac

• reconstruction and interpolation: move similar code to functions

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  72ead36

Commits on Apr 28, 2022

• random stretching parameter

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  12766ed

Commits on Apr 29, 2022

• move fractal reconstruction formulas to formulae/

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  549a592

• Revert "move fractal reconstruction formulas to formulae/"

  Show description for 0fd42ec
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  committed
  0fd42ec

• Revert "Revert "move fractal reconstruction formulas to formulae/""

  Show description for 59b3bab
  pdziekan

  committed
  59b3bab

• pbl smg: set fra iter

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  a788a4d

• pbl smg: fra iter 4

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  34ad9a5

Commits on May 4, 2022

• alloc refined arrays only for required advectees

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  committed
  be4a6a3

Commits on May 9, 2022

• grid refinement: refined boundary in the middle between mpi domains

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  6e5ba14

• cleanup

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  4275cea

Commits on Jun 6, 2022

• comments

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  079a75e

Commits on Sep 27, 2022

• include <random> in fractal reconstruction

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  36452f9

• stop on first compilation error in Debug mode

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  10a335d

• sgs fra make typdefs public

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  committed
  60cd21f

Commits on Sep 28, 2022

• hdf5 output: handle sgs_fra family tag

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  e5e4879

• domain decmposition functions static

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  2c532ec

• add hook_ante_record_all

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  eee8135

• hook_pre_record_all -> hook_ante_record_all

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  5015952

• barrier in output common

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  0194299

Commits on Sep 30, 2022

• interpolate ref: dont calc stretchin params

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  bbe52f9

Commits on Oct 3, 2022

• record prof refined

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  c9b3b62

Commits on Oct 5, 2022

• comment

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  be08975

• formulae for averaging from refined to regular grid

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  815377c

• formulae for averaging from refined to regular grid: working but without bcond

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  committed
  a7e4a9f

Commits on Oct 18, 2022

• averaging from refined to regular: fixes for edge cells

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  committed
  9217fd4

Commits on Oct 19, 2022

• hdf output: record_aux_refined

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  04ce94d

• refined arrays: add halo size 1

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  bf7e3ca

Commits on Oct 21, 2022

• additional set of bconds for refined arrays

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  d97fc3e

• TEMP: add refinement to pbl

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  45e0dff

• concurr_reg for separate init()

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  f5adbd8

Commits on Oct 24, 2022

• refined courant spatial interpolation

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  bbeb89b

Commits on Oct 25, 2022

• reconstruction: barrier after stretching parameters are created

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  199d9c9

Commits on Oct 26, 2022

• fix remote refined bconds

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  7194a95

Commits on Oct 27, 2022

• mpi grid refinemet wip

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  3577129

Commits on Oct 28, 2022

• xchng_ref

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  900c07c

• delete debug output

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  e4dc451

Commits on Nov 24, 2022

• for doubles use mt19937_64

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  804af0b

• do not generate stretching parameters at each reconsteuction, make user do it

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  30114ab

• do not generate stretching parameters at each reconsteuction, make user do it

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  e61c945

Commits on Nov 30, 2022

• track conc_reg

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  ddde107

• Merge branch 'fractal_with_bconds' of github.com:pdziekan/libmpdataxx into fractal_with_bconds

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  0d5c838

• fixes for non-mpi compilation

  

  Piotr Dziekan

  committed
  ab489d8

Commits on Mar 8, 2023

• comment

  pdziekan

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  18d254a

• comment

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  committed
  e6dcd01

Commits on Mar 9, 2023

• negative reconstructuion dbg

  

  Piotr Dziekan

  committed
  22483f9

• fix neg recon debug

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  b521daf

• Merge branch 'master' into fractal_with_bconds

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  23230c7

Commits on Mar 10, 2023

• record prof const for refined

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  6b8f907

Commits on Mar 13, 2023

• record prof hlpr assert fix

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  2c07067

Commits on Mar 14, 2023

• fractal: remove tabs

  

  Piotr Dziekan

  committed
  a540477

• fractal neg dbg: print d

  

  Piotr Dziekan

  committed
  db06d95

• fractal neg dbg: comment it out

  

  Piotr Dziekan

  committed
  e78204b

Commits on Mar 22, 2023

• hdf and hdf5_xdmf: wip on specializations for solvers with refinemenet

  pdziekan

  committed
  c8a5759

• Merge branch 'fractal_with_bconds' of github.com:pdziekan/libmpdataxx into fractal_with_bconds

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  committed
  3e2ca2d

• hdf5_xdmf: ctor fix

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  committed
  71a1d20

• hdf5: move _ref output to ref specialization

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  da6a8e6

Commits on Mar 23, 2023

• hdf5: move _ref output to ref specialization: aux_dsc

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• record aux dsc hlpr ref/nonref separation

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• cd hdf5_ref ...

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  2807e52

• cd hdf5_ref ...

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  23efe74

• record aux dsc hlpr ref/nonref separation

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  8543f8d

Commits on Mar 24, 2023

• record aux dsc hlpr ref/nonref separation: compiling version (3D only)

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  d0e4f64

Commits on Mar 27, 2023

• ref hdf5 fixes

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  b8ed801

Commits on Apr 3, 2023

• fill refinee distmem only if distmem size > 1

  

  Piotr Dziekan

  committed
  38c72db

• xchng_ref after generating d_j

  pdziekan

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  11579de

Commits on Apr 5, 2023

• use halo in spatial_avergae_ref_2_reg; TODO: if it works, grid_size is not needed

  

  Piotr Dziekan

  committed
  ff8c2a4

Commits on Apr 6, 2023

• Revert "use halo in spatial_avergae_ref_2_reg; TODO: if it works, grid_size is not needed"

  Show description for 8570037
  

  Piotr Dziekan

  committed
  8570037

• spatial average r2r weighting: account for domain edges

  

  Piotr Dziekan

  committed
  6ca6059

Commits on Apr 7, 2023

• add avg_edge_sclr_ref and spatial_average_ref2reg

  

  Piotr Dziekan

  committed
  ee3a1f4

• avg_edge_sclr_ref and spatial_average protected

  

  Piotr Dziekan

  committed
  d35ae71

• remove nancheck

  

  Piotr Dziekan

  committed
  dd89289

Commits on Apr 11, 2023

• DBG: dont do spatial averaging ref_2_reg, just copy corresponding cells

  

  Piotr Dziekan

  committed
  72f8051

• Revert "DBG: dont do spatial averaging ref_2_reg, just copy corresponding cells"

  Show description for a11ee8e
  

  Piotr Dziekan

  committed
  a11ee8e

• Revert "Revert "DBG: dont do spatial averaging ref_2_reg, just copy corresponding cells""

  Show description for d9d299c
  

  Piotr Dziekan

  committed
  d9d299c

Commits on Apr 12, 2023

• do avg_edge_sclr_ref after refinemenet/interpolation

  

  Piotr Dziekan

  committed
  8565eb0

Commits on Apr 13, 2023

• more barriers in refine/interpolate

  

  Piotr Dziekan

  committed
  f0e93f0

Commits on Apr 18, 2023

• full spatial_ref_2_reg

  

  Piotr Dziekan

  committed
  08a30e6

Commits on Apr 19, 2023

• Revert "full spatial_ref_2_reg"

  Show description for 312af4f
  

  Piotr Dziekan

  committed
  312af4f

Commits on Apr 21, 2023

• Revert "Revert "full spatial_ref_2_reg""

  Show description for 2d29583
  

  Piotr Dziekan

  committed
  2d29583

Commits on Apr 25, 2023

• stretching parameters from E. Akinlabi: move the to separate namespace

  pdziekan

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  8a27891

• for reference, include the stretching parameter data from E. Akinlabi

  pdziekan

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  753f46e

• include the stretching parameter data from M. Waclawczyk

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  38dc714

• add a readme to stretching parameters from Marta

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  392867c

• stretchin parameters from LES data: formulae for th subsat

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  c9588ae

• formulae: move stretchng parameters to separate file

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  b8deacd

• other stretching parameters WIP: check distribution of values, seems to bo a lot of extremes

  pdziekan

  committed
  d7ca208

Commits on Apr 26, 2023

• Marta's stretch params: dat->hpp

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  c5be8a3

• add other stretching parameters from Marta

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  00e5135

Commits on May 17, 2023

• new stretch params: LES supersat, but halved

  

  Piotr Dziekan

  committed
  cf806de