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Test workflow#40

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josefineegekvist wants to merge 132 commits intomasterices-eg/wg_WGSFD:masterfrom test-workflowices-eg/wg_WGSFD:test-workflowCopy head branch name to clipboard

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Commits on Apr 27, 2021

• Update VMSdatacall_proposedWorkflow.r

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Commits on Dec 3, 2021

• Create global.R

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• Create 1_eflalo_tacsat_preprocessing.R

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• Rename global.R to 0_global.R

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• Create 2_eflalo_tacsat_analysis.R

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• Create 3_data_submission.R

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Commits on Dec 13, 2021

• Create 1_eflalo_tacsat_preprocessing.R

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• add functions which will become icesDATSU

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• * add function to get dataset version IDs and add dependencies

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Commits on Dec 14, 2021

• Add main web services, and a worksheet to test things

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• copied the four files comprising the workflow over to my own folder, unchanged

  

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• Changed the order of tho checks 'Remove trip with overlap with another trip' and 'Remove records with arrival date before departure time'. Added proposal to fix 'overlapping trips' part.

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

  

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• added necessary shapfiles, functions, and script to assign metier to eflalo data

  

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• add feild types and code to create dummy data

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

  

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• added Einar's QC markdown

  

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• merge by area added to assign metier script

  

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

  

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Commits on Jan 25, 2022

• added a function that extracts FAO code from a spatial polygon layer

  

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• wrote a wrapper for these few lines

  

  Gonzalez-Mirelis

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• corrected an object name and removed the unneeded columns from input data

  

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• added the rest of blob/master/Metiers/Scripts/script_metiers.R

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Commits on Feb 2, 2022

• commit latest change in workflow development

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• commit all changes in workflow for datacall

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• changes from Marta in the preprocessing stage

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• changes to file structure in the folder

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• change when table 1 and table 2 are loaded

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Commits on Feb 7, 2022

• add lines for WEB API submission

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• further work on DATSU functions

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• small edit: remove argument name from call to screen_vms_file

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• year changed to test with one year only

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• years changed back to original version

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• remove trailing spaces

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• update with colin's changes

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• add icesConnect to packages to install

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• Update the vessellength category and the submission api part

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Commits on Feb 8, 2022

• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• settings changed to fit Thuenen folder structure

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• Codes changed 2022-02-07 by Christian and Torsten

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• review the submission via API lines

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• minor typos and comments added

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• comments with instructions added

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• testing with German data ongoing

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• wrong folder

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Commits on Feb 9, 2022

• mimor change only

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• code is running on German data

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Commits on Feb 11, 2022

• replace teh sp funciton in VMS points in ICES region by sf lirbary process. Upgrade the poitns in habrour function aprameters .

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• fix vessel length vocabulary references

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• remove assignation of loaded files ino variables.

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Commits on Feb 14, 2022

• add filter the acgive pings only

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• replace empty space by "no_required"

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• changes in German data to run test proposed workflow

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Commits on Feb 15, 2022

• changes in German data to comply with ices datsu rules

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• last corrections, code is running for DEU_2020

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• Update 3_data_submission.R

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• Create Data preparation and submission.md

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• Update Data preparation and submission.md

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• Update Data preparation and submission.md

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• Update 1_eflalo_tacsat_preprocessing.R

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• Update Data preparation and submission.md

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• ann. VE-ID fixed

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• Update Data preparation and submission.md

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Commits on Feb 16, 2022

• Update Data preparation and submission.md

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• Update Data preparation and submission.md

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• runs severas years

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• fix the VE_LEN field in table 1 and table 2

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• add rm.na

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• change spaces

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• update the main folder files with suggested changes

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• add country code check and na.rm TRUE

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• Update Data preparation and submission.md

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• Update Data preparation and submission.md

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Commits on Feb 17, 2022

• QC-markdown code working on 2022 datsu format

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• QC-markdown code working on 2022 datsu format

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• QC-codes without national pathes to data

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Commits on Feb 18, 2022

• Update Data preparation and submission.md

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• headers updated

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• Merge branch 'test-workflow' of https://github.com/ices-eg/wg_WGSFD into test-workflow

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• Update Data preparation and submission.md

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Commits on Feb 19, 2022

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Commits on Feb 21, 2022

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Commits on Feb 22, 2022

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