<bot> update dependencies*.log files(s) #2557
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| tags-ignore: | |
| - '**' | |
| # concurrency: | |
| # group: ${{ github.workflow }}-${{ github.ref }} | |
| # # don't cancel on main/master/default | |
| # cancel-in-progress: ${{ format('refs/heads/{0}', github.event.repository.default_branch) != github.ref }} | |
| env: | |
| PY_COLORS: "1" | |
| BOT_NAME: wipacdevbot | |
| BOT_EMAIL: [email protected] | |
| REALTIME_EVENTS_DIR: /home/runner/work/skymap_scanner/skymap_scanner/tests/data/realtime_events | |
| SKYSCAN_CACHE_DIR: /home/runner/work/skymap_scanner/skymap_scanner/cache | |
| SKYSCAN_OUTPUT_DIR: /home/runner/work/skymap_scanner/skymap_scanner/output | |
| SKYSCAN_DEBUG_DIR: /home/runner/work/skymap_scanner/skymap_scanner/debug | |
| # see source tests/env-vars.sh | |
| jobs: | |
| ############################################################################# | |
| # PACKAGING & LINTERS | |
| ############################################################################# | |
| py-versions: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.versions.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - id: versions | |
| uses: WIPACrepo/[email protected] | |
| # flake8: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - uses: actions/setup-python@v3 | |
| # - uses: WIPACrepo/[email protected] | |
| mypy: | |
| needs: [py-versions] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| py3: ${{ fromJSON(needs.py-versions.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.py3 }} | |
| - uses: WIPACrepo/[email protected] | |
| py-setup: | |
| # needs: [wait-for-tests] # NOTE: this would be needed if enabling "all tests to pass" branch protection | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: 'true' | |
| large-packages: false # TODO: remove once https://github.com/jlumbroso/free-disk-space/issues/4 is fixed | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.PERSONAL_ACCESS_TOKEN }} | |
| - uses: WIPACrepo/[email protected] | |
| if: github.actor != ${{ env.BOT_NAME }} # no auto-updates for bots # should match all 'git_committer_name' uses | |
| with: | |
| git_committer_name: ${{ env.BOT_NAME }} | |
| git_committer_email: ${{ env.BOT_EMAIL }} | |
| ############################################################################# | |
| # TESTS | |
| ############################################################################# | |
| test-build-docker: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| test-build-docker-pulsar: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: 'true' | |
| large-packages: false # TODO: remove once https://github.com/jlumbroso/free-disk-space/issues/4 is fixed | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| file: Dockerfile_pulsar | |
| tags: icecube/skymap_scanner:local-pulsar | |
| test-run-singularity-dummy-reco: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| env: | |
| SKYSCAN_BROKER_ADDRESS: user1:password@localhost/test | |
| # SKYSCAN_BROKER_AUTH: user1 # using this would override password in address | |
| services: | |
| rabbitmq: | |
| image: bitnami/rabbitmq:latest | |
| env: | |
| RABBITMQ_USERNAME: user1 | |
| RABBITMQ_PASSWORD: password | |
| RABBITMQ_VHOST: test | |
| BITNAMI_DEBUG: true | |
| # Note: `--network` option is not supported. | |
| options: >- | |
| --name rabbitmq | |
| --health-cmd "rabbitmqctl node_health_check" | |
| --health-interval 5s | |
| --health-timeout 5s | |
| --health-retries 10 | |
| ports: | |
| - 5672:5672 | |
| - 15672:15672 | |
| steps: | |
| - uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: 'true' | |
| large-packages: false # TODO: remove once https://github.com/jlumbroso/free-disk-space/issues/4 is fixed | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| # cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| load: true | |
| - uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.1.2 | |
| - name: build singularity image | |
| run: | | |
| sudo singularity build skymap_scanner.sif docker-daemon://icecube/skymap_scanner:local | |
| ls -lh skymap_scanner.sif | |
| - name: run singularity container | |
| run: | | |
| source tests/env-vars.sh | |
| mkdir $SKYSCAN_CACHE_DIR | |
| mkdir $SKYSCAN_OUTPUT_DIR | |
| # Launch Server | |
| singularity run skymap_scanner.sif \ | |
| python -m skymap_scanner.server \ | |
| --reco-algo dummy \ | |
| --event-file $REALTIME_EVENTS_DIR/hese_event_01.json \ | |
| --cache-dir $SKYSCAN_CACHE_DIR \ | |
| --output-dir $SKYSCAN_OUTPUT_DIR \ | |
| --client-startup-json ./startup.json \ | |
| --nsides 1:0 \ | |
| --simulated-event \ | |
| & | |
| ./resources/launch_scripts/wait_for_file.sh ./startup.json $CLIENT_STARTER_WAIT_FOR_STARTUP_JSON | |
| # Launch Clients | |
| nclients=$(( $_NCLIENTS * $(nproc) )) | |
| echo "Launching $nclients clients" | |
| mkdir $SKYSCAN_DEBUG_DIR | |
| export EWMS_PILOT_TASK_TIMEOUT=1800 # 30 mins | |
| for i in $( seq 1 $nclients ); do | |
| singularity run skymap_scanner.sif \ | |
| python -m skymap_scanner.client \ | |
| --client-startup-json ./startup.json \ | |
| --debug-directory $SKYSCAN_DEBUG_DIR \ | |
| & | |
| echo -e "\tclient #$i launched" | |
| done | |
| wait -n # for server | |
| for i in $( seq 1 $nclients ); do | |
| wait -n # for client | |
| done | |
| - name: look at results file (.npz) | |
| run: | | |
| ls . | |
| ls $SKYSCAN_OUTPUT_DIR | |
| outfile=$(ls -d $SKYSCAN_OUTPUT_DIR/*.npz) | |
| echo $outfile | |
| - name: broker docker logs | |
| if: always() | |
| run: | | |
| docker logs rabbitmq | |
| test-run-nsides-thresholds-dummy: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| nsides: [ | |
| "1:0", | |
| "1:0 2:12", | |
| "1:0 2:12 4:12" | |
| ] | |
| predictive_scanning_threshold: [ | |
| 1.0, | |
| 0.65, | |
| ] | |
| ewms_pilot_concurrent_tasks: [ | |
| 0, | |
| 2, | |
| ] | |
| env: | |
| SKYSCAN_BROKER_ADDRESS: user1@localhost/test | |
| SKYSCAN_BROKER_AUTH: password # using this would override password in address | |
| services: | |
| rabbitmq: | |
| image: bitnami/rabbitmq:latest | |
| env: | |
| RABBITMQ_USERNAME: user1 | |
| RABBITMQ_PASSWORD: password | |
| RABBITMQ_VHOST: test | |
| BITNAMI_DEBUG: true | |
| # Note: `--network` option is not supported. | |
| options: >- | |
| --name rabbitmq | |
| --health-cmd "rabbitmqctl node_health_check" | |
| --health-interval 5s | |
| --health-timeout 5s | |
| --health-retries 10 | |
| ports: | |
| - 5672:5672 | |
| - 15672:15672 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| # cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| load: true | |
| - name: run | |
| run: | | |
| set -x | |
| source tests/env-vars.sh | |
| export _RECO_ALGO=dummy | |
| export _EVENTS_FILE=$(realpath $REALTIME_EVENTS_DIR/hese_event_01.json) | |
| export _NSIDES="${{ matrix.nsides }}" | |
| export _PREDICTIVE_SCANNING_THRESHOLD=${{ matrix.predictive_scanning_threshold }} | |
| export _NCLIENTS=$(nproc) | |
| export EWMS_PILOT_CONCURRENT_TASKS=${{ matrix.ewms_pilot_concurrent_tasks }} | |
| free # dump memory stats | |
| cd ./resources/launch_scripts | |
| ./local-scan.sh | |
| free # dump memory stats | |
| - name: check no nsides skipped | |
| run: | | |
| ls $SKYSCAN_OUTPUT_DIR | |
| # get newest run*.json | |
| export outfile=$(find $SKYSCAN_OUTPUT_DIR -type f -name "run*.json" -exec stat -c '%y %n' {} + | sort | tail -1 | awk '{print $4}') | |
| echo $outfile | |
| python3 -c ' | |
| import json | |
| import os | |
| with open(os.getenv("outfile")) as f: | |
| pydict = json.load(f) | |
| nsides = "${{ matrix.nsides }}" | |
| assert len(pydict) == nsides.count(":") | |
| ' | |
| - name: reco-icetray logs | |
| if: always() | |
| run: | | |
| sudo apt install tree | |
| tree $SKYSCAN_DEBUG_DIR | |
| find $SKYSCAN_DEBUG_DIR -type f -not -name "*.i3" -not -name "*.pkl" -exec "more" {} + | cat # recursively cats with filenames (delimited by :::::::) | |
| - name: broker docker logs | |
| if: always() | |
| run: | | |
| docker logs rabbitmq | |
| test-run-realistic: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| reco_algo: [ | |
| millipede_original, | |
| millipede_wilks, | |
| splinempe | |
| ] | |
| eventfile: [ | |
| hese_event_01.json, | |
| run00136766-evt000007637140-GOLD.pkl, | |
| run00136662-evt000035405932-BRONZE.pkl | |
| ] | |
| ewms_pilot_concurrent_tasks: [ | |
| 0, | |
| 2, | |
| ] | |
| exclude: | |
| # splinempe should not run on HESE | |
| - reco_algo: splinempe | |
| eventfile: hese_event_01.json | |
| env: | |
| SKYSCAN_BROKER_ADDRESS: user1@localhost/test | |
| SKYSCAN_BROKER_AUTH: password # using this would override password in address | |
| services: | |
| rabbitmq: | |
| image: bitnami/rabbitmq:latest | |
| env: | |
| RABBITMQ_USERNAME: user1 | |
| RABBITMQ_PASSWORD: password | |
| RABBITMQ_VHOST: test | |
| BITNAMI_DEBUG: true | |
| # Note: `--network` option is not supported. | |
| options: >- | |
| --name rabbitmq | |
| --health-cmd "rabbitmqctl node_health_check" | |
| --health-interval 5s | |
| --health-timeout 5s | |
| --health-retries 10 | |
| ports: | |
| - 5672:5672 | |
| - 15672:15672 | |
| steps: | |
| - uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: 'true' | |
| large-packages: false # TODO: remove once https://github.com/jlumbroso/free-disk-space/issues/4 is fixed | |
| - uses: actionhippie/swap-space@v1 | |
| with: | |
| size: 10G | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| # cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| load: true | |
| - name: run | |
| run: | | |
| set -x | |
| source tests/env-vars.sh | |
| export _RECO_ALGO=${{ matrix.reco_algo }} | |
| export _EVENTS_FILE=$(realpath $REALTIME_EVENTS_DIR/${{ matrix.eventfile }}) | |
| export _NSIDES="1:0" | |
| export EWMS_PILOT_CONCURRENT_TASKS=${{ matrix.ewms_pilot_concurrent_tasks }} | |
| if [[ $EWMS_PILOT_CONCURRENT_TASKS == "0" ]]; then | |
| # if not using concurrent tasks, then use multiple clients | |
| export _NCLIENTS=$(nproc) | |
| else | |
| export _NCLIENTS=1 | |
| fi | |
| free # dump memory stats | |
| cd ./resources/launch_scripts | |
| ./local-scan.sh | |
| free # dump memory stats | |
| - name: test output against known result (.json) | |
| run: | | |
| ls $SKYSCAN_OUTPUT_DIR | |
| # get newest run*.json | |
| outfile=$(find $SKYSCAN_OUTPUT_DIR -type f -name "run*.json" -exec stat -c '%y %n' {} + | sort | tail -1 | awk '{print $4}') | |
| echo $outfile | |
| cat $outfile | |
| pip install . # don't need icecube, so no docker container needed | |
| python tests/compare_scan_results.py \ | |
| --actual $outfile \ | |
| --expected tests/data/results_json/${{ matrix.reco_algo }}/$(basename $outfile) \ | |
| --assert \ | |
| || (cat $(ls *.diff.json) && false) | |
| - name: reco-icetray logs | |
| if: always() | |
| run: | | |
| sudo apt install tree | |
| tree $SKYSCAN_DEBUG_DIR | |
| find $SKYSCAN_DEBUG_DIR -type f -not -name "*.i3" -not -name "*.pkl" -exec "more" {} + | cat # recursively cats with filenames (delimited by :::::::) | |
| - name: broker docker logs | |
| if: always() | |
| run: | | |
| docker logs rabbitmq | |
| test-file-staging: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| # cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| load: true | |
| - name: run | |
| run: | | |
| docker run --rm -i \ | |
| icecube/skymap_scanner:local \ | |
| python tests/file_staging.py | |
| test-run-single-pixel: | |
| needs: test-build-docker | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| dir: [ | |
| "BRONZE", | |
| "GOLD", | |
| "JSON", | |
| ] | |
| reco_algo: | |
| [ | |
| millipede_original, | |
| millipede_wilks, | |
| splinempe | |
| ] | |
| exclude: | |
| # splinempe should not run on HESE | |
| - reco_algo: splinempe | |
| dir: "JSON" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| cache-from: type=gha | |
| # cache-to: type=gha,mode=min | |
| file: Dockerfile | |
| tags: icecube/skymap_scanner:local | |
| load: true | |
| - name: run | |
| run: | | |
| source tests/env-vars.sh | |
| # grab the GCDQp_packet key and throw into a file | |
| jq '.GCDQp_packet' \ | |
| tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}/startup.json > \ | |
| tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}//GCDQp_packet.json | |
| # move python file to subdir to make bindings simpler | |
| cp tests/data/reco_pixel_pkls/get_toclient_msg_pkl.py \ | |
| tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }} | |
| # create the in.pkl | |
| docker run --network="host" --rm -i \ | |
| --shm-size=6gb \ | |
| --mount type=bind,source=$(readlink -f tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}),target=/local/pkls \ | |
| --env PY_COLORS=1 \ | |
| $(env | grep '^SKYSCAN_' | awk '$0="--env "$0') \ | |
| icecube/skymap_scanner:local \ | |
| python /local/pkls/get_toclient_msg_pkl.py \ | |
| --pframe-pkl /local/pkls/pframe.pkl \ | |
| --reco-algo ${{ matrix.reco_algo }} | |
| hexdump -C tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}/in.pkl | |
| # run | |
| docker run --network="host" --rm -i \ | |
| --shm-size=6gb \ | |
| --mount type=bind,source=$(readlink -f tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}),target=/local/pkls \ | |
| --env PY_COLORS=1 \ | |
| $(env | grep '^SKYSCAN_' | awk '$0="--env "$0') \ | |
| icecube/skymap_scanner:local \ | |
| python -m skymap_scanner.client.reco_icetray \ | |
| --in-pkl /local/pkls/in.pkl \ | |
| --reco-algo ${{ matrix.reco_algo }} \ | |
| --gcdqp-packet-json /local/pkls/GCDQp_packet.json \ | |
| --baseline-gcd-file $(jq -r '.baseline_GCD_file' tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}/startup.json) \ | |
| --out-pkl /local/pkls/out.pkl | |
| - name: test output against known result (.pkl) | |
| run: | | |
| ls tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }} | |
| # need icecube for depickling, so docker container needed | |
| docker run --network="host" --rm -i \ | |
| --shm-size=6gb \ | |
| --mount type=bind,source=$(readlink -f tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}),target=/local/pkls \ | |
| --env PY_COLORS=1 \ | |
| $(env | grep '^SKYSCAN_' | awk '$0="--env "$0') \ | |
| icecube/skymap_scanner:local \ | |
| python tests/compare_reco_pixel_pkl.py \ | |
| --actual /local/pkls/out.pkl \ | |
| --expected /local/pkls/$(basename $(ls tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}/*.out.pkl)) \ | |
| --diff-out-dir /local/pkls/ \ | |
| --assert \ | |
| || (cat $(ls tests/data/reco_pixel_pkls/${{ matrix.reco_algo }}/${{ matrix.dir }}/*.diff.json) && false) | |
| ############################################################################# | |
| # GITHUB RELEASE | |
| ############################################################################# | |
| release: | |
| # only run on main/master/default | |
| if: format('refs/heads/{0}', github.event.repository.default_branch) == github.ref | |
| # have to wait for tests so python-semantic-release can push (branch protection on main don't work w/ the bot) | |
| needs: [ | |
| mypy, | |
| py-setup, | |
| test-build-docker, | |
| test-build-docker-pulsar, | |
| test-run-singularity-dummy-reco, | |
| test-file-staging, | |
| test-run-nsides-thresholds-dummy, | |
| test-run-realistic, | |
| test-run-single-pixel | |
| ] | |
| runs-on: ubuntu-latest | |
| concurrency: release | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.PERSONAL_ACCESS_TOKEN }} | |
| - name: Python Semantic Release | |
| uses: python-semantic-release/[email protected] | |
| with: | |
| git_committer_name: ${{ env.BOT_NAME }} | |
| git_committer_email: ${{ env.BOT_EMAIL }} | |
| github_token: ${{ secrets.PERSONAL_ACCESS_TOKEN }} | |
| # repository_username: __token__ | |
| # repository_password: ${{ secrets.PYPI_TOKEN }} |