autoupdate pre-commit hooks (#42)

* autoupdate pre-commit hooks

updates:
- [github.com/pycqa/pylint: v3.2.6 → v3.3.1](pylint-dev/pylint@v3.2.6...v3.3.1)
- [github.com/astral-sh/ruff-pre-commit: v0.6.3 → v0.6.9](astral-sh/ruff-pre-commit@v0.6.3...v0.6.9)
- [github.com/PyCQA/doc8: v1.1.1 → v1.1.2](PyCQA/doc8@v1.1.1...v1.1.2)
- [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0)

* update python in actions

* remove 3.13 because of pytables

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Kevin Meagher <[email protected]>

.github/workflows/tests.yml

@@ -17,11 +17,11 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
-        os: [ubuntu-22.04]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        os: [ubuntu-24.04]
         include:
           - python-version: "3.12"
-            os: macos-13
+            os: macos-14
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}

.pre-commit-config.yaml

@@ -24,7 +24,7 @@ repos:
     hooks:
       - id: codespell
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.18.0"
+    rev: "1.19.0"
     hooks:
       - id: blacken-docs
         args: [-l 100]
@@ -36,20 +36,20 @@ repos:
         additional_dependencies: [numpy]
         exclude: ^contrib/
   - repo: https://github.com/pycqa/pylint
-    rev: v3.2.6
+    rev: v3.3.1
     hooks:
       - id: pylint
         files: simweights
         exclude: ^contrib/
         additional_dependencies: [numpy, pandas]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.3
+    rev: v0.6.9
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]
       - id: ruff-format
   - repo: https://github.com/PyCQA/doc8
-    rev: "v1.1.1"
+    rev: "v1.1.2"
     hooks:
       - id: doc8
   - repo: https://github.com/pre-commit/pygrep-hooks
@@ -68,7 +68,7 @@ repos:
       - id: forbid-crlf
       - id: forbid-tabs
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-added-large-files
       - id: check-builtin-literals

pyproject.toml

@@ -29,15 +29,14 @@ keywords = ["python", "science", "astronomy", "astrophysics", "IceCube", "neutri
 license = {file = "LICENSES/BSD-2-Clause.txt"}
 name = "simweights"
 readme = "README.rst"
-requires-python = "~=3.7"
+requires-python = "~=3.8"
 
 [project.optional-dependencies]
 dev = ["pytest", "pre-commit", "reuse", "black", "ruff", "pylint", "mypy"]
 docs = ["sphinx", "sphinx-rtd-theme", "pandas"]
 examples = ['matplotlib']
 test = [
   "h5py",
-  "tables < 3.8; python_version < '3.9'",
   "tables",
   "pandas",
   "uproot",
@@ -78,7 +77,7 @@ warn_unreachable = true
 max-line-length = "128"
 
 [tool.pylint.messages_control]
-disable = "C0114,R0902,R0913"
+disable = "C0114,R0902,R0913,R0917"
 
 [tool.pytest.ini_options]
 addopts = ["-ra", "--strict-config", "--strict-markers", "--cov=simweights", "-W ignore"]
@@ -91,8 +90,6 @@ xfail_strict = true
 [tool.ruff]
 line-length = 128
 namespace-packages = ["examples", "contrib", "docs"]
-src = ["src"]
-target-version = "py38"
 
 [tool.ruff.lint]
 fixable = ["I"]
@@ -130,7 +127,7 @@ convention = "google"
 [tool.tox]
 legacy_tox_ini = """
 [tox]
-envlist = py3{8,9,10,11,12}
+envlist = py3{9,10,11,12,13}
 isolated_build = True
 
 [testenv]