add toml formatter

.pre-commit-config.yaml

@@ -11,6 +11,11 @@ repos:
     hooks:
       - id: prettier
         files: \.ya?ml$
+  - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
+    rev: v2.12.0
+    hooks:
+      - id: pretty-format-toml
+        args: [--autofix]
   - repo: https://github.com/fsfe/reuse-tool
     rev: v3.0.1
     hooks:

pyproject.toml

@@ -3,119 +3,118 @@
 # SPDX-License-Identifier: BSD-2-Clause
 
 [build-system]
-requires = ["flit_core >=3.2,<4"]
 build-backend = "flit_core.buildapi"
+requires = ["flit_core >=3.2,<4"]
 
 [project]
-name = "simweights"
-readme = "README.rst"
-requires-python = "~=3.7"
-license = {file = "LICENSES/BSD-2-Clause.txt"}
 authors = [{name = "Kevin Meagher"}]
-keywords = ["python", "science", "astronomy", "astrophysics", "IceCube", "neutrino", "simulation"]
 classifiers = [
-    'Development Status :: 4 - Beta',
-    'Intended Audience :: Science/Research',
-    'License :: OSI Approved :: BSD License',
-    'Operating System :: MacOS :: MacOS X',
-    'Operating System :: POSIX :: Linux',
-    'Programming Language :: Python',
-    'Programming Language :: Python :: 3.8',
-    'Programming Language :: Python :: 3.9',
-    'Programming Language :: Python :: 3.10',
-    'Programming Language :: Python :: 3.11',
-    'Programming Language :: Python :: 3.12',
-    'Topic :: Scientific/Engineering :: Astronomy',
-    'Topic :: Scientific/Engineering :: Physics',
-    ]
+  'Development Status :: 4 - Beta',
+  'Intended Audience :: Science/Research',
+  'License :: OSI Approved :: BSD License',
+  'Operating System :: MacOS :: MacOS X',
+  'Operating System :: POSIX :: Linux',
+  'Programming Language :: Python',
+  'Programming Language :: Python :: 3.8',
+  'Programming Language :: Python :: 3.9',
+  'Programming Language :: Python :: 3.10',
+  'Programming Language :: Python :: 3.11',
+  'Programming Language :: Python :: 3.12',
+  'Topic :: Scientific/Engineering :: Astronomy',
+  'Topic :: Scientific/Engineering :: Physics'
+]
 dependencies = ["numpy>=1.21.2", "scipy"]
 dynamic = ["version", "description"]
+keywords = ["python", "science", "astronomy", "astrophysics", "IceCube", "neutrino", "simulation"]
+license = {file = "LICENSES/BSD-2-Clause.txt"}
+name = "simweights"
+readme = "README.rst"
+requires-python = "~=3.7"
 
 [project.optional-dependencies]
+dev = ["pytest", "pre-commit", "reuse", "black", "ruff", "pylint", "mypy"]
+docs = ["sphinx", "sphinx-rtd-theme", "pandas"]
 test = ["h5py", "tables < 3.8; python_version < '3.9'", "tables <= 3.9.2", "pandas", "uproot", "pytest-cov"]
-docs = ["sphinx","sphinx-rtd-theme","pandas"]
-dev = ["pytest","pre-commit","reuse","black","ruff","pylint","mypy"]
 
 [project.scripts]
 simweights = "simweights.cmdline:main"
 
 [project.urls]
-Source = "https://github.com/icecube/simweights"
-Documentation = "https://docs.icecube.aq/simweights/main"
 Collaboration = "https://icecube.wisc.edu"
+Documentation = "https://docs.icecube.aq/simweights/main"
+Source = "https://github.com/icecube/simweights"
 
-[tool.pytest.ini_options]
-minversion = 7.0
-testpaths = ["tests"]
-log_cli_level = "INFO"
-xfail_strict = true
-filterwarnings = ["error"]
-addopts = ["-ra", "--strict-config", "--strict-markers", "--cov=simweights", "-W ignore"]
+[tool.codespell]
+ignore-words-list = 'livetime'
+skip = '_build'
+
+[tool.coverage.report]
+exclude_also = ["from numpy.typing import"]
 
 [tool.coverage.run]
-source = ["simweights"]
 command_line = "-m pytest"
 omit = ["*/simweights/cmdline.py"]
+source = ["simweights"]
 
-[tool.coverage.report]
-exclude_also = ["from numpy.typing import"]
-
-[tool.codespell]
-skip = '_build'
-ignore-words-list = 'livetime'
+[tool.doc8]
+max-line-length = 128
 
 [tool.mypy]
+enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
 plugins = "numpy.typing.mypy_plugin"
-# show_error_codes = true
-warn_unreachable = true
 strict = true
-enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
+warn_unreachable = true
 
 [tool.pylint.format]
 max-line-length = "128"
 
 [tool.pylint.messages_control]
 disable = "C0114,R0902,R0913"
 
+[tool.pytest.ini_options]
+addopts = ["-ra", "--strict-config", "--strict-markers", "--cov=simweights", "-W ignore"]
+filterwarnings = ["error"]
+log_cli_level = "INFO"
+minversion = 7.0
+testpaths = ["tests"]
+xfail_strict = true
+
 [tool.ruff]
-src = ["src"]
 line-length = 128
-target-version = "py38"
 namespace-packages = ["examples", "contrib", "docs"]
+src = ["src"]
+target-version = "py38"
 
 [tool.ruff.lint]
-select = ["ALL"]
 fixable = ["I"]
 ignore = [
-    "ANN401", # any-type
-    "FBT",    # flake8-boolean-trap
-    "S101",   # assert-used
-    "COM812", # confilcts with ruff formatter
-    "ISC001", # confilcts with ruff formatter
-    "PLR0913",# Too many arguments in function definition
-    ]
-
-[tool.ruff.lint.pydocstyle]
-convention = "google"
+  "ANN401",  # any-type
+  "FBT",  # flake8-boolean-trap
+  "S101",  # assert-used
+  "COM812",  # confilcts with ruff formatter
+  "ISC001",  # confilcts with ruff formatter
+  "PLR0913"  # Too many arguments in function definition
+]
+select = ["ALL"]
 
 [tool.ruff.lint.per-file-ignores]
 "contrib/*" = ["T201"]
-"tests/*" = [
-    "D",      # pydocstyle
-    "N",      # pep8-naming
-    "ANN",    # flake8-annotations
-    "PT",     # flake8-pytest-style
-    "PGH001", # eval
-    "SLF001", # private-member-access
-    "PLR2004",# magic-value-comparison
-    "PLR0915",# too-many-statements
-    "S307",   # suspicious-eval-usage
-    ]
 "examples/*" = [
-    "D",      # pydocstyle
-    "F401",   # unused-import
-    "T201",    # flake8-print
+  "D",  # pydocstyle
+  "F401",  # unused-import
+  "T201"  # flake8-print
+]
+"tests/*" = [
+  "D",  # pydocstyle
+  "N",  # pep8-naming
+  "ANN",  # flake8-annotations
+  "PT",  # flake8-pytest-style
+  "PGH001",  # eval
+  "SLF001",  # private-member-access
+  "PLR2004",  # magic-value-comparison
+  "PLR0915",  # too-many-statements
+  "S307"  # suspicious-eval-usage
 ]
 
-[tool.doc8]
-max-line-length=128
+[tool.ruff.lint.pydocstyle]
+convention = "google"