Frequently asked questions about using Github scripts or working on Beocat
##Using Github
See https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/UsingGithubScripts.md
##Getting started and logging in to Beocat or an SGE cluster
See https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/UsingBeocat.md
##Uploading, downloading and editing files on Beocat or an SGE cluster
For general instructions see https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/BeocatEditingTransferingFiles.md. For instructions on getting sequence data from your sequencing facillity, NCBI's FTP, or the Short Read Archive (SRA) see https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/GetRawData.md.
##Trouble logging onto Beocat?
If you are having trouble logging in on campus make sure you are connected the ksuwireless rather than guest. To login to Beocat from off campus you will need to VPN into the network. See the following link for instructions.
http://www.k-state.edu/its/security/vpn/
##Finding NGS workflows and tutorials for Beocat
See http://i5k-kinbre-script-share.github.io/transcriptome-and-genome-assembly/
##Helpful Beocat or an SGE cluster commands
See: https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/BeocatHelpfulCommands.md
##Report a new issue about these scripts
If your question was not answered here see the link below
See: https://github.com/i5K-KINBRE-script-share/FAQ/blob/master/ReportIssues.md
##Using Trinity on Beocat:
Dong Hun Kim has made an excellent write up of how to install Trinity on Beocat