Tests

Tests #714

	name: Tests

	on:
	schedule: # Every night at 5am
	- cron: '0 5 * * *'
	pull_request:
	types: [opened, synchronize, reopened]
	workflow_dispatch:
	push:
	branches:
	- main # is activated once a PR gets merged

	jobs:
	Test_Karabo:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout Code
	uses: actions/checkout@v3
	- name: Install Conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniforge-variant: Mambaforge
	- name: Install Deps
	shell: bash -el {0}
	run: \|
	conda create -y -n test_karabo python=3.9
	conda activate test_karabo
	mamba env update --file environment.yaml
	pip install -r requirements.txt
	pip install ipykernel
	python -m ipykernel install --user --name python3
	- name: Test Dev-Tools
	shell: bash -l {0}
	run: \|
	conda activate test_karabo
	flake8 .
	black --check .
	isort --check .
	mypy .
	- name: Test Code
	shell: bash -l {0}
	run: \|
	conda activate test_karabo
	export IS_GITHUB_RUNNER=true
	export RUN_GPU_TESTS=false
	export RUN_NOTEBOOK_TESTS=true
	pip install . --no-deps
	pytest --cov=./ --cov-report=xml
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	directory: ./coverage/reports/
	env_vars: OS,PYTHON
	files: ./coverage1.xml,./coverage2.xml,!./cache
	fail_ci_if_error: false
	name: codecov-karabo

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