J uranic/cosmx dirschema update #2887
Workflow file for this run
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name: Portal CI | |
on: [push, pull_request] | |
jobs: | |
build: | |
# Available versions: | |
# https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-syntax-for-github-actions#jobsjob_idruns-on | |
# Uniprot's SSL setup is not sufficient for | |
# the latest Ubuntu security settings. | |
# So, use an older Ubuntu for now. | |
# | |
# More details: | |
# https://github.com/ebi-uniprot/uniprot-rest-api/issues/23 | |
# https://github.com/Ensembl/ensembl-rest/issues/427 | |
runs-on: ubuntu-22.04 | |
strategy: | |
matrix: | |
version: | |
- '3.9' | |
# TODO: Python 3.10 doesn't work for me, locally: | |
# 'pip install requirements-dev.txt' fails... | |
# Something wrong with typed-ast? | |
# ... but if it works on CI, great! | |
# | |
# Python 3.9 does work for me locally: | |
# Will wait for someone else to have trouble with 3.10 before investing any time here. | |
steps: | |
- uses: actions/checkout@v2 | |
# with: | |
# submodules: 'recursive' | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.version }} | |
architecture: 'x64' | |
- run: sudo apt-get install parallel | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install requests parameterized | |
- run: pip install -r requirements.txt | |
- run: pip install -r requirements-dev.txt | |
- name: Run test script | |
run: ./test.sh | |
env: | |
GITHUB_REF_NAME: ${{ github.ref_name }} | |
# GH_ACTIONS: true |