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2 changes: 1 addition & 1 deletion NOTES.md
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|Ontology|Version|
| :---: | :---: |
|PCL|2023-02-27|
|UBERON|2023-09-05|
|CL|2023-09-21|
|PCL|2023-02-27|

### ASCT+b Tables

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2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/README.md
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ASCT+B Validation Reports for Anatomical_Systems (2023-10-18)
ASCT+B Validation Reports for Anatomical_Systems (2023-10-25)
=============================================================

Table of contents
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ASCT+B Validation Reports for Anatomical_Systems (2023-10-18)
ASCT+B Validation Reports for Anatomical_Systems (2023-10-25)
=============================================================

# ASCT+B as Graph
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4 changes: 2 additions & 2 deletions docs/Anatomical_Systems/report_images_Anatomical_Systems.tsv
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Expand Up @@ -3,10 +3,10 @@ UBERON:0000945 https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagr
UBERON:0001004 http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg
UBERON:0001009 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
UBERON:0001043 http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001911 http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg
UBERON:0002049 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
UBERON:0002097 http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg
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2 changes: 1 addition & 1 deletion docs/Blood/README.md
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ASCT+B Validation Reports for Blood (2023-10-18)
ASCT+B Validation Reports for Blood (2023-10-25)
================================================

Table of contents
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ASCT+B Validation Reports for Blood (2023-10-18)
ASCT+B Validation Reports for Blood (2023-10-25)
================================================

# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Blood_vasculature/README.md
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ASCT+B Validation Reports for Blood_vasculature (2023-10-18)
ASCT+B Validation Reports for Blood_vasculature (2023-10-25)
============================================================

Table of contents
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ASCT+B Validation Reports for Blood_vasculature (2023-10-18)
ASCT+B Validation Reports for Blood_vasculature (2023-10-25)
============================================================

# ASCT+B as Graph
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6 changes: 3 additions & 3 deletions docs/Blood_vasculature/report_images_Blood_vasculature.tsv
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Expand Up @@ -10,8 +10,8 @@ UBERON:0001138 http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
UBERON:0001139 https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif
UBERON:0001140 http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png
UBERON:0001142 http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png
UBERON:0001183 http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png
UBERON:0001184 http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
UBERON:0001185 http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
Expand Down Expand Up @@ -115,10 +115,10 @@ UBERON:0001639 http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
UBERON:0001640 http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png
UBERON:0001641 https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif
UBERON:0001642 https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif
UBERON:0001651 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
UBERON:0001651 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
UBERON:0001652 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
UBERON:0001651 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
UBERON:0001652 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
UBERON:0001652 http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
UBERON:0001653 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
UBERON:0001654 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
UBERON:0001656 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
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2 changes: 1 addition & 1 deletion docs/Bone-Marrow/README.md
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ASCT+B Validation Reports for Bone-Marrow (2023-10-18)
ASCT+B Validation Reports for Bone-Marrow (2023-10-25)
======================================================

Table of contents
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ASCT+B Validation Reports for Bone-Marrow (2023-10-18)
ASCT+B Validation Reports for Bone-Marrow (2023-10-25)
======================================================

# ASCT+B as Graph
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6 changes: 3 additions & 3 deletions docs/Brain/README.md
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ASCT+B Validation Reports for Brain (2023-10-18)
ASCT+B Validation Reports for Brain (2023-10-25)
================================================

Table of contents
Expand Down Expand Up @@ -50,14 +50,14 @@ If the term's name/label and the name/label given by SME are too different, plea

If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.

1. The term _PCL:0015079_ has a different name/label in the source ontology in the following 1 row _[736](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=736:736)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN MAP6D1_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015120_ has a different name/label in the source ontology in the following 1 row _[738](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=738:738)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN FTH1P3_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _UBERON:0002705_ has a different name/label in the source ontology in the following 1 row _[102](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=102:102)_. The name/label in the **ASCT+B table** is _midline nuclear complex_ and the one in the **ontology** is _midline nuclear group_. For reference, the given name/label **by SMEs** is _midline nuclear complex_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015119_ has a different name/label in the source ontology in the following 1 row _[737](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=737:737)_. The name/label in the **ASCT+B table** is _Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L3-6 OPALIN ENPP6_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015079_ has a different name/label in the source ontology in the following 1 row _[736](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=736:736)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN MAP6D1_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.


## Blank ontology ID

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ASCT+B Validation Reports for Brain (2023-10-18)
ASCT+B Validation Reports for Brain (2023-10-25)
================================================

# ASCT+B as Graph
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14 changes: 7 additions & 7 deletions docs/Brain/logs_dict.json
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Expand Up @@ -3021,6 +3021,13 @@
],
"no_found_id": [],
"diff_label": [
{
"id": "PCL:0015079",
"label": "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"asct_label": "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L2-6 OPALIN MAP6D1",
"row_number": 736
},
{
"id": "PCL:0015120",
"label": "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)",
Expand All @@ -3041,13 +3048,6 @@
"asct_label": "Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L3-6 OPALIN ENPP6",
"row_number": 737
},
{
"id": "PCL:0015079",
"label": "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"asct_label": "Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L2-6 OPALIN MAP6D1",
"row_number": 736
}
],
"no_parent": []
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6 changes: 3 additions & 3 deletions docs/Brain/report_images_Brain.tsv
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Expand Up @@ -29,8 +29,8 @@ UBERON:0001920 http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200
UBERON:0001925 http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
UBERON:0001926 http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png
UBERON:0001927 http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
UBERON:0001929 http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg
UBERON:0001929 http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg
UBERON:0001929 http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg
UBERON:0001943 http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png
UBERON:0001945 http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
UBERON:0001946 http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png
Expand All @@ -49,8 +49,8 @@ UBERON:0002151 http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_hor
UBERON:0002152 http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png
UBERON:0002163 http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png
UBERON:0002206 http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg
UBERON:0002265 http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
UBERON:0002285 http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
UBERON:0002286 http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
Expand All @@ -70,8 +70,8 @@ UBERON:0002651 http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png
UBERON:0002655 http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png
UBERON:0002661 http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png
UBERON:0002686 http://upload.wikimedia.org/wikipedia/commons/8/86/Surfacegyri.JPG
UBERON:0002688 http://upload.wikimedia.org/wikipedia/commons/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg
UBERON:0002688 http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg
UBERON:0002688 http://upload.wikimedia.org/wikipedia/commons/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg
UBERON:0002702 http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png
UBERON:0002705 http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
UBERON:0002707 http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png
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2 changes: 1 addition & 1 deletion docs/Eye/README.md
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ASCT+B Validation Reports for Eye (2023-10-18)
ASCT+B Validation Reports for Eye (2023-10-25)
==============================================

Table of contents
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ASCT+B Validation Reports for Eye (2023-10-18)
ASCT+B Validation Reports for Eye (2023-10-25)
==============================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Fallopian_tube (2023-10-18)
ASCT+B Validation Reports for Fallopian_tube (2023-10-25)
=========================================================

Table of contents
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ASCT+B Validation Reports for Fallopian_tube (2023-10-18)
ASCT+B Validation Reports for Fallopian_tube (2023-10-25)
=========================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Heart (2023-10-18)
ASCT+B Validation Reports for Heart (2023-10-25)
================================================

Table of contents
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ASCT+B Validation Reports for Heart (2023-10-18)
ASCT+B Validation Reports for Heart (2023-10-25)
================================================

# ASCT+B as Graph
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4 changes: 2 additions & 2 deletions docs/Heart/report_images_Heart.tsv
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Expand Up @@ -14,9 +14,9 @@ UBERON:0002137 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the
UBERON:0002146 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
UBERON:0002351 http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg
UBERON:0002351 http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg
UBERON:0002352 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0002352 http://upload.wikimedia.org/wikipedia/commons/9/92/Gray501.png
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif
UBERON:0002352 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif
UBERON:0005438 http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png
UBERON:0006958 http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png
2 changes: 1 addition & 1 deletion docs/Kidney/README.md
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ASCT+B Validation Reports for Kidney (2023-10-18)
ASCT+B Validation Reports for Kidney (2023-10-25)
=================================================

Table of contents
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ASCT+B Validation Reports for Kidney (2023-10-18)
ASCT+B Validation Reports for Kidney (2023-10-25)
=================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Knee (2023-10-18)
ASCT+B Validation Reports for Knee (2023-10-25)
===============================================

Table of contents
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ASCT+B Validation Reports for Knee (2023-10-18)
ASCT+B Validation Reports for Knee (2023-10-25)
===============================================

# ASCT+B as Graph
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8 changes: 4 additions & 4 deletions docs/Large_intestine/README.md
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ASCT+B Validation Reports for Large_intestine (2023-10-18)
ASCT+B Validation Reports for Large_intestine (2023-10-25)
==========================================================

Table of contents
Expand Down Expand Up @@ -38,7 +38,7 @@ This report provides a list of terms not found neither in UBERON nor in CL. Plea

This report provides a general quality check of the terms used in the ASCT+B table. Typos, font case (upper case), punctuation mistakes in IDs: two colons, spaces, underscore instead of a colon.

- No issues found.
1. It might have a typo in the term _GLAND_ in the following 1 row _[1213](https://docs.google.com/spreadsheets/d/1zzyJg9zL_mbSfcqXWNbQgf9KMsxZViVgugm79H9fUp8/edit#gid=2043181688&range=1213:1213)_. The term id should have this pattern: UBERON:NNNNNNN or CL:NNNNNNN or PCL:NNNNNNN. The ontology name in upper case. N is a number, and it should have exactly 7 numbers after the colon. Please change it in the ASCT+B table.


## Different labels
Expand All @@ -50,10 +50,10 @@ If the term's name/label and the name/label given by SME are too different, plea

If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.

1. The term _CL:0000244_ has a different name/label in the source ontology in the following 1 row _[1196](https://docs.google.com/spreadsheets/d/1zzyJg9zL_mbSfcqXWNbQgf9KMsxZViVgugm79H9fUp8/edit#gid=2043181688&range=1196:1196)_. The name/label in the **ASCT+B table** is __ and the one in the **ontology** is _transitional epithelial cell_. For reference, the given name/label **by SMEs** is _transitional_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _CL:0009009_ has a different name/label in the source ontology in the following 1 row _[15](https://docs.google.com/spreadsheets/d/1zzyJg9zL_mbSfcqXWNbQgf9KMsxZViVgugm79H9fUp8/edit#gid=2043181688&range=15:15)_. The name/label in the **ASCT+B table** is _paneth cell of epithelium of large intestine_ and the one in the **ontology** is _paneth cell of colon_. For reference, the given name/label **by SMEs** is _Paneth_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _CL:0000244_ has a different name/label in the source ontology in the following 1 row _[1196](https://docs.google.com/spreadsheets/d/1zzyJg9zL_mbSfcqXWNbQgf9KMsxZViVgugm79H9fUp8/edit#gid=2043181688&range=1196:1196)_. The name/label in the **ASCT+B table** is __ and the one in the **ontology** is _transitional epithelial cell_. For reference, the given name/label **by SMEs** is _transitional_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.


## Blank ontology ID

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ASCT+B Validation Reports for Large_intestine (2023-10-18)
ASCT+B Validation Reports for Large_intestine (2023-10-25)
==========================================================

# ASCT+B as Graph
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14 changes: 7 additions & 7 deletions docs/Large_intestine/logs_dict.json
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Expand Up @@ -651,19 +651,19 @@
],
"no_found_id": [],
"diff_label": [
{
"id": "CL:0000244",
"label": "transitional epithelial cell",
"asct_label": "",
"user_label": "transitional",
"row_number": 1196
},
{
"id": "CL:0009009",
"label": "paneth cell of colon",
"asct_label": "paneth cell of epithelium of large intestine",
"user_label": "Paneth",
"row_number": 15
},
{
"id": "CL:0000244",
"label": "transitional epithelial cell",
"asct_label": "",
"user_label": "transitional",
"row_number": 1196
}
],
"no_parent": [
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ASCT+B Validation Reports for Liver (2023-10-18)
ASCT+B Validation Reports for Liver (2023-10-25)
================================================

Table of contents
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ASCT+B Validation Reports for Liver (2023-10-18)
ASCT+B Validation Reports for Liver (2023-10-25)
================================================

# ASCT+B as Graph
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