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2 changes: 1 addition & 1 deletion NOTES.md
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|Ontology|Version|
| :---: | :---: |
|UBERON|2023-09-05|
|CL|2023-09-21|
|PCL|2023-02-27|
|CL|2023-09-21|

### ASCT+b Tables

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2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/README.md
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ASCT+B Validation Reports for Anatomical_Systems (2023-10-25)
ASCT+B Validation Reports for Anatomical_Systems (2023-11-01)
=============================================================

Table of contents
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ASCT+B Validation Reports for Anatomical_Systems (2023-10-25)
ASCT+B Validation Reports for Anatomical_Systems (2023-11-01)
=============================================================

# ASCT+B as Graph
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4 changes: 2 additions & 2 deletions docs/Anatomical_Systems/report_images_Anatomical_Systems.tsv
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Expand Up @@ -3,10 +3,10 @@ UBERON:0000945 https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagr
UBERON:0001004 http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg
UBERON:0001009 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
UBERON:0001043 http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001557 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001911 http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg
UBERON:0002049 http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
UBERON:0002097 http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg
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2 changes: 1 addition & 1 deletion docs/Blood/README.md
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ASCT+B Validation Reports for Blood (2023-10-25)
ASCT+B Validation Reports for Blood (2023-11-01)
================================================

Table of contents
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ASCT+B Validation Reports for Blood (2023-10-25)
ASCT+B Validation Reports for Blood (2023-11-01)
================================================

# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Blood_vasculature/README.md
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ASCT+B Validation Reports for Blood_vasculature (2023-10-25)
ASCT+B Validation Reports for Blood_vasculature (2023-11-01)
============================================================

Table of contents
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ASCT+B Validation Reports for Blood_vasculature (2023-10-25)
ASCT+B Validation Reports for Blood_vasculature (2023-11-01)
============================================================

# ASCT+B as Graph
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4 changes: 2 additions & 2 deletions docs/Blood_vasculature/report_images_Blood_vasculature.tsv
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Expand Up @@ -10,8 +10,8 @@ UBERON:0001138 http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
UBERON:0001139 https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif
UBERON:0001140 http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png
UBERON:0001142 http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png
UBERON:0001182 http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif
UBERON:0001183 http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png
UBERON:0001184 http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
UBERON:0001185 http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
Expand Down Expand Up @@ -145,8 +145,8 @@ UBERON:0002460 http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
UBERON:0002493 http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png
UBERON:0003478 http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
UBERON:0003711 http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png
UBERON:0003713 http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png
UBERON:0003713 http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png
UBERON:0003713 http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png
UBERON:0004639 http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png
UBERON:0004640 http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png
UBERON:0004646 http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png
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2 changes: 1 addition & 1 deletion docs/Bone-Marrow/README.md
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ASCT+B Validation Reports for Bone-Marrow (2023-10-25)
ASCT+B Validation Reports for Bone-Marrow (2023-11-01)
======================================================

Table of contents
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ASCT+B Validation Reports for Bone-Marrow (2023-10-25)
ASCT+B Validation Reports for Bone-Marrow (2023-11-01)
======================================================

# ASCT+B as Graph
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6 changes: 3 additions & 3 deletions docs/Brain/README.md
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ASCT+B Validation Reports for Brain (2023-10-25)
ASCT+B Validation Reports for Brain (2023-11-01)
================================================

Table of contents
Expand Down Expand Up @@ -52,12 +52,12 @@ If the name/label in the ontology contains *obsolete*, please look into OLS, cli

1. The term _PCL:0015079_ has a different name/label in the source ontology in the following 1 row _[736](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=736:736)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN MAP6D1 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN MAP6D1_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015120_ has a different name/label in the source ontology in the following 1 row _[738](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=738:738)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN FTH1P3_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _UBERON:0002705_ has a different name/label in the source ontology in the following 1 row _[102](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=102:102)_. The name/label in the **ASCT+B table** is _midline nuclear complex_ and the one in the **ontology** is _midline nuclear group_. For reference, the given name/label **by SMEs** is _midline nuclear complex_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015119_ has a different name/label in the source ontology in the following 1 row _[737](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=737:737)_. The name/label in the **ASCT+B table** is _Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L3-6 OPALIN ENPP6_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

1. The term _PCL:0015120_ has a different name/label in the source ontology in the following 1 row _[738](https://docs.google.com/spreadsheets/d/1DrsZo9QUgnye6qX9hGKQoXVruRbM3LZPT2tzUy-SixI/edit#gid=2056967441&range=738:738)_. The name/label in the **ASCT+B table** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)_ and the one in the **ontology** is _Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)_. For reference, the given name/label **by SMEs** is _Oligo L2-6 OPALIN FTH1P3_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.


## Blank ontology ID

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ASCT+B Validation Reports for Brain (2023-10-25)
ASCT+B Validation Reports for Brain (2023-11-01)
================================================

# ASCT+B as Graph
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Expand Up @@ -3028,13 +3028,6 @@
"user_label": "Oligo L2-6 OPALIN MAP6D1",
"row_number": 736
},
{
"id": "PCL:0015120",
"label": "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"asct_label": "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L2-6 OPALIN FTH1P3",
"row_number": 738
},
{
"id": "UBERON:0002705",
"label": "midline nuclear group",
Expand All @@ -3048,6 +3041,13 @@
"asct_label": "Oligo L3-6 OPALIN-like ENPP6 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L3-6 OPALIN ENPP6",
"row_number": 737
},
{
"id": "PCL:0015120",
"label": "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte precursor cell (Hsap)",
"asct_label": "Oligo L2-6 OPALIN FTH1P3 primary motor cortex oligodendrocyte (Hsap)",
"user_label": "Oligo L2-6 OPALIN FTH1P3",
"row_number": 738
}
],
"no_parent": []
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6 changes: 3 additions & 3 deletions docs/Brain/report_images_Brain.tsv
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Expand Up @@ -2,8 +2,8 @@ term image_url
CL:0000540 https://www.swissbiopics.org/api/image/Neuron_cells.svg
UBERON:0000052 http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png
UBERON:0000935 http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png
UBERON:0000956 http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg
UBERON:0000956 http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg
UBERON:0000956 http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg
UBERON:0000988 http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png
UBERON:0001384 http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png
UBERON:0001717 http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
Expand All @@ -29,8 +29,8 @@ UBERON:0001920 http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200
UBERON:0001925 http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
UBERON:0001926 http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png
UBERON:0001927 http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
UBERON:0001929 http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg
UBERON:0001929 http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg
UBERON:0001929 http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg
UBERON:0001943 http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png
UBERON:0001945 http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
UBERON:0001946 http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png
Expand All @@ -49,8 +49,8 @@ UBERON:0002151 http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_hor
UBERON:0002152 http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png
UBERON:0002163 http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png
UBERON:0002206 http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg
UBERON:0002264 http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg
UBERON:0002265 http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
UBERON:0002285 http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
UBERON:0002286 http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
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ASCT+B Validation Reports for Eye (2023-10-25)
ASCT+B Validation Reports for Eye (2023-11-01)
==============================================

Table of contents
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ASCT+B Validation Reports for Eye (2023-10-25)
ASCT+B Validation Reports for Eye (2023-11-01)
==============================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Fallopian_tube (2023-10-25)
ASCT+B Validation Reports for Fallopian_tube (2023-11-01)
=========================================================

Table of contents
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ASCT+B Validation Reports for Fallopian_tube (2023-10-25)
ASCT+B Validation Reports for Fallopian_tube (2023-11-01)
=========================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Heart (2023-10-25)
ASCT+B Validation Reports for Heart (2023-11-01)
================================================

Table of contents
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ASCT+B Validation Reports for Heart (2023-10-25)
ASCT+B Validation Reports for Heart (2023-11-01)
================================================

# ASCT+B as Graph
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4 changes: 2 additions & 2 deletions docs/Heart/report_images_Heart.tsv
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Expand Up @@ -12,11 +12,11 @@ UBERON:0002134 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the
UBERON:0002135 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
UBERON:0002137 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
UBERON:0002146 http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
UBERON:0002351 http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg
UBERON:0002351 http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg
UBERON:0002351 http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg
UBERON:0002352 http://upload.wikimedia.org/wikipedia/commons/9/92/Gray501.png
UBERON:0002352 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif
UBERON:0002353 http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
UBERON:0005438 http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png
UBERON:0006958 http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png
2 changes: 1 addition & 1 deletion docs/Kidney/README.md
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ASCT+B Validation Reports for Kidney (2023-10-25)
ASCT+B Validation Reports for Kidney (2023-11-01)
=================================================

Table of contents
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ASCT+B Validation Reports for Kidney (2023-10-25)
ASCT+B Validation Reports for Kidney (2023-11-01)
=================================================

# ASCT+B as Graph
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term image_url
UBERON:0000074 https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg
UBERON:0000074 http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg
UBERON:0000074 https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg
UBERON:0000362 https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg
UBERON:0001225 https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg
UBERON:0001228 https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
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ASCT+B Validation Reports for Knee (2023-10-25)
ASCT+B Validation Reports for Knee (2023-11-01)
===============================================

Table of contents
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ASCT+B Validation Reports for Knee (2023-10-25)
ASCT+B Validation Reports for Knee (2023-11-01)
===============================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Large_intestine (2023-10-25)
ASCT+B Validation Reports for Large_intestine (2023-11-01)
==========================================================

Table of contents
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ASCT+B Validation Reports for Large_intestine (2023-10-25)
ASCT+B Validation Reports for Large_intestine (2023-11-01)
==========================================================

# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Large_intestine/report_images_Large_intestine.tsv
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Expand Up @@ -8,8 +8,8 @@ UBERON:0001156 http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schem
UBERON:0001157 http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg
UBERON:0001158 http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png
UBERON:0001159 http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg
UBERON:0001245 http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif
UBERON:0001245 http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg
UBERON:0001245 http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif
UBERON:0001367 http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif
UBERON:0001821 http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png
UBERON:0002067 http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg
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2 changes: 1 addition & 1 deletion docs/Liver/README.md
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ASCT+B Validation Reports for Liver (2023-10-25)
ASCT+B Validation Reports for Liver (2023-11-01)
================================================

Table of contents
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ASCT+B Validation Reports for Liver (2023-10-25)
ASCT+B Validation Reports for Liver (2023-11-01)
================================================

# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Lung/README.md
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ASCT+B Validation Reports for Lung (2023-10-25)
ASCT+B Validation Reports for Lung (2023-11-01)
===============================================

Table of contents
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ASCT+B Validation Reports for Lung (2023-10-25)
ASCT+B Validation Reports for Lung (2023-11-01)
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# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Lung/report_images_Lung.tsv
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term image_url
UBERON:0001004 http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg
UBERON:0001558 http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
UBERON:0002012 https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
UBERON:0002040 http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png
UBERON:0002173 http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png
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2 changes: 1 addition & 1 deletion docs/Lymph_node/README.md
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ASCT+B Validation Reports for Lymph_node (2023-10-25)
ASCT+B Validation Reports for Lymph_node (2023-11-01)
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Table of contents
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ASCT+B Validation Reports for Lymph_node (2023-10-25)
ASCT+B Validation Reports for Lymph_node (2023-11-01)
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# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Lymph_vasculature/README.md
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ASCT+B Validation Reports for Lymph_vasculature (2023-10-25)
ASCT+B Validation Reports for Lymph_vasculature (2023-11-01)
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Table of contents
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ASCT+B Validation Reports for Lymph_vasculature (2023-10-25)
ASCT+B Validation Reports for Lymph_vasculature (2023-11-01)
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# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Main_Bronchus/README.md
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ASCT+B Validation Reports for Main_Bronchus (2023-10-25)
ASCT+B Validation Reports for Main_Bronchus (2023-11-01)
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Table of contents
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ASCT+B Validation Reports for Main_Bronchus (2023-10-25)
ASCT+B Validation Reports for Main_Bronchus (2023-11-01)
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# ASCT+B as Graph
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2 changes: 1 addition & 1 deletion docs/Mammary_Gland/README.md
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ASCT+B Validation Reports for Mammary_Gland (2023-10-25)
ASCT+B Validation Reports for Mammary_Gland (2023-11-01)
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Table of contents
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ASCT+B Validation Reports for Mammary_Gland (2023-10-25)
ASCT+B Validation Reports for Mammary_Gland (2023-11-01)
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# ASCT+B as Graph
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