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@anitacaron
anitacaron committed Dec 7, 2023
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25 changes: 12 additions & 13 deletions NOTES.md
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|Ontology|Version|
| :---: | :---: |
|UBERON|2023-10-27|
|PCL|2023-02-27|
|CL|2023-10-19|
|UBERON|2023-10-27|

### ASCT+b Tables

|Organ|Version|Date|
| :---: | :---: | :---: |
|Anatomical_Systems|v1.0|December 15, 2023|
|Blood|v1.4|revise for October 1, 2023|
|Blood|v1.3|December 15, 2022|
|Bone-Marrow|v1.4|December 15, 2023|
|Brain|v1.5|December 15, 2023|
|Eye|v1.4|revise for October 1, 2023|
|Eye|v1.2|June 15, 2023|
|Fallopian_tube|v1.2|December 15, 2023|
|Heart|v1.3|December 15, 2023|
|Kidney|v1.4|December 15, 2023|
|Knee|v1.1|December 15, 2023|
|Large_intestine|v1.4|revise for October, 2023|
|Large_intestine|v1.3|December 15, 2022|
|Liver|v1.2|December 15, 2023|
|Lung|v1.4|December 15, 2023|
|Lymph_node|v1.3|December 15, 2023|
|Lymph_vasculature|v1.4|December 15, 2023|
|Main_Bronchus|v1.1|December 15, 2023|
|Mammary_Gland|v1.0|revise for October 1, 2023|
|Muscular_System|v1.1|December 15, 2023|
|Ovary|v1.3|revise for April 1, 2023|
|Ovary|v1.2|12/15/2022|
|Pancreas|v1.3|December 15, 2023|
|Palatine_Tonsil|V1.0|December 15, 2023|
|Peripheral_nervous_system|v1.1|December 15, 2023|
|Placenta|v1.1|December 15, 2023|
|Prostate|v1.1|December 15, 2023|
|Skeleton|v1.1|December 15, 2023|
|Skin|v1.3|December 15, 2023|
|Small_intestine|v1.2|revise for April 1, 2023|
|Spinal_Cord|v1.0|revise for October 1, 2023|
|Spleen|v1.4|revise for October 1, 2023|
|Small_intestine|v1.1|December 15, 2022|
|Spinal_Cord|v1.0|June 15, 2023|
|Spleen|v1.3|December 15, 2022|
|Thymus|v1.4|December 15, 2023|
|Trachea|v1.1|revise for October 1|
|Ureter|NA|revise for April 2023|
|Urinary_bladder|v1.1|revise for April 2024|
|Uterus|v1.2|revise for October 1, 2022|
|Trachea|v1.0|June 15, 2023|
|Ureter|v1.0|12/1/2021|
|Urinary_bladder|v1.0|12/1/2021|
|Uterus|v1.1|May 6, 2022|
|Blood_vasculature|v1.5|December 15, 2023|
2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/README.md
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ASCT+B Validation Reports for Anatomical_Systems (2023-12-06)
ASCT+B Validation Reports for Anatomical_Systems (2023-12-07)
=============================================================

Table of contents
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ASCT+B Validation Reports for Anatomical_Systems (2023-12-06)
ASCT+B Validation Reports for Anatomical_Systems (2023-12-07)
=============================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Blood (2023-12-06)
ASCT+B Validation Reports for Blood (2023-12-07)
================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Blood_vasculature (2023-12-06)
ASCT+B Validation Reports for Blood_vasculature (2023-12-07)
============================================================

Table of contents
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ASCT+B Validation Reports for Blood_vasculature (2023-12-06)
ASCT+B Validation Reports for Blood_vasculature (2023-12-07)
============================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Bone-Marrow (2023-12-06)
ASCT+B Validation Reports for Bone-Marrow (2023-12-07)
======================================================

Table of contents
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ASCT+B Validation Reports for Bone-Marrow (2023-12-06)
ASCT+B Validation Reports for Bone-Marrow (2023-12-07)
======================================================

# ASCT+B as Graph
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ASCT+B Validation Reports for Brain (2023-12-06)
ASCT+B Validation Reports for Brain (2023-12-07)
================================================

Table of contents
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ASCT+B Validation Reports for Brain (2023-12-06)
ASCT+B Validation Reports for Brain (2023-12-07)
================================================

# ASCT+B as Graph
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12 changes: 4 additions & 8 deletions docs/Eye/Eye_AS_CT_strict_log.tsv
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s slabel user_slabel o olabel user_olabel row_number
CL:0000036 epithelial fate stem cell epithelial fate stem cell UBERON:0000482 basal lamina of epithelium basal epithelium 74
CL:0000066 epithelial cell epithelial cell UBERON:0002506 iris epithelium iris epithelium 61
CL:0000125 glial cell glial cell UBERON:0018107 foveola of retina foveola of retina 75
CL:0000125 glial cell glial cell UBERON:0035966 scleral lamina cribrosa scleral lamina cribrosa 65
CL:0000125 glial cell glial cell UBERON:0004904 neuron projection bundle connecting eye with brain optic nerve 64
CL:0000129 microglial cell microglial cell UBERON:0000966 retina retina 48
CL:0000561 Amacrine Cell Amacrine Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 12
CL:0000573 retinal cone cell retinal cone cell UBERON:0001789 outer nuclear layer of retina outer nuclear layer 33
CL:0000604 retinal rod cell retinal rod cell UBERON:0001789 outer nuclear layer of retina outer nuclear layer 51
CL:0000636 Mueller cell Muller glia UBERON:0001791 inner nuclear layer of retina inner nuclear layer 49
CL:0000669 pericyte Pericyte UBERON:0004864 vasculature of retina vasculature 50
CL:0000740 retinal ganglion cell Ganglion cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 69
CL:0000740 retinal ganglion cell Ganglion cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 37
CL:0000740 retinal ganglion cell Ganglion cell UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer 69
CL:0000745 retina horizontal cell Horizontal Cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 39
CL:0002225 secondary lens fiber mature fiber cell UBERON:0000390 lens nucleus Fetal nucleus 44
CL:0002228 primary lens fiber primary lens fiber UBERON:0002444 lens fiber lens Fibers 38
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CL:0004219 A2 amacrine cell A2 cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 18
CL:0004232 starburst amacrine cell starburst amacrine cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 19
CL:0004253 wide field retinal amacrine cell wide field cell UBERON:0001791 inner nuclear layer of retina inner nuclear layer 15
CL:0011004 lens fiber cell lens fiber cell UBERON:0000389 lens cortex cortex 46
CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens fiber lens Fibers 41
CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens Fiber lens Fiber 53
CL:0011004 lens fiber cell lens fiber cell UBERON:0000389 lens cortex cortex 47
CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens Fiber lens Fiber 53
CL:0011004 lens fiber cell lens fiber cell UBERON:0002444 lens fiber lens Fibers 41
CL:0011004 lens fiber cell lens fiber cell UBERON:0000389 lens cortex cortex 46
CL:0011004 lens fiber cell lens fiber cell UBERON:0000390 lens nucleus Adult nucleus 45
CL:0011005 GABAergic interneuron GABAergic interneuron UBERON:0001791 inner nuclear layer of retina inner nuclear layer 13
CL:0017004 telocyte telocyte UBERON:0003952 anterior stroma of cornea anterior stroma of cornea 57
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