Automated report

NOTES.md

@@ -7,43 +7,44 @@ Release Notes
 |Ontology|Version|
 | :---: | :---: |
 |CL|2024-01-04|
-|UBERON|2024-01-18|
 |PCL|2024-01-04|
+|UBERON|2024-01-18|
 
 ### ASCT+b Tables
 
 |Organ|Version|Date|
 | :---: | :---: | :---: |
 |Anatomical_Systems|v1.0|December 15, 2023|
-|Blood|v1.3|December 15, 2022|
-|Bone-Marrow|v1.4|December 15, 2023|
-|Brain|v1.5|December 15, 2023|
-|Eye|v1.2|June 15, 2023|
-|Fallopian_tube|v1.2|December 15, 2023|
-|Heart|v1.3|December 15, 2023|
-|Kidney|v1.4|December 15, 2023|
-|Knee|v1.1|December 15, 2023|
-|Large_intestine|v1.3|December 15, 2022|
-|Liver|v1.2|December 15, 2023|
-|Lung|v1.4|December 15, 2023|
-|Lymph_node|v1.3|December 15, 2023|
-|Lymph_vasculature|v1.4|December 15, 2023|
-|Main_Bronchus|v1.1|December 15, 2023|
-|Muscular_System|v1.1|December 15, 2023|
-|Ovary|v1.2|12/15/2022|
-|Pancreas|v1.3|December 15, 2023|
-|Palatine_Tonsil|V1.0|December 15, 2023|
-|Peripheral_nervous_system|v1.1|December 15, 2023|
-|Placenta|v1.1|December 15, 2023|
+|Blood|v1.4|revise for October 1, 2023|
+|Bone-Marrow|v1.5|revise for April 1, 2024|
+|Brain|v1.6|Revise for April 1, 2024|
+|Eye|v1.4|revise for October 1, 2023|
+|Fallopian_tube|v1.3|Revise for April 1, 2024|
+|Heart|v1.3|revise for April 2024|
+|Kidney|v1.4|revise for 4/1/2024|
+|Knee|v1.3|revise for April 1, 2024|
+|Large_intestine|v1.4|revise for October, 2023|
+|Liver|v1.3|NA|
+|Lung|v1.5|NA|
+|Lymph_node|v1.4|revise for April 1, 2024|
+|Lymph_vasculature|v1.5|revise for April 1, 2024|
+|Main_Bronchus|v1.0|revise for October 1, 2023|
+|Mammary_Gland|v1.0|revise for October 1, 2023|
+|Muscular_System|v1.2|revise for April 1, 2024|
+|Ovary|v1.3|revise for April 1, 2023|
+|Pancreas|v1.4|revise for April 1, 2024|
+|Palatine_Tonsil|V1.1|revise for April 1, 2024|
+|Peripheral_nervous_system|v1.2|revise for April 1, 2024|
+|Placenta|v1.2|revise for April 1, 2024|
 |Prostate|v1.1|December 15, 2023|
-|Skeleton|v1.1|December 15, 2023|
-|Skin|v1.3|December 15, 2023|
-|Small_intestine|v1.1|December 15, 2022|
-|Spinal_Cord|v1.0|June 15, 2023|
-|Spleen|v1.3|December 15, 2022|
-|Thymus|v1.4|December 15, 2023|
-|Trachea|v1.0|June 15, 2023|
-|Ureter|v1.0|12/1/2021|
-|Urinary_bladder|v1.0|12/1/2021|
-|Uterus|v1.1|May 6, 2022|
+|Skeleton|v1.1|revise for April 1, 2024|
+|Skin|v1.4|Revise for April 1, 2024|
+|Small_intestine|v1.2|revise for April 1, 2023|
+|Spinal_Cord|v1.0|revise for October 1, 2023|
+|Spleen|v1.4|revise for October 1, 2023|
+|Thymus|v1.5|revise for April 1, 2024|
+|Trachea|v1.1|revise for October 1|
+|Ureter|NA|revise for April 2023|
+|Urinary_bladder|v1.1|revise for April 2024|
+|Uterus|v1.2|revise for October 1, 2022|
 |Blood_vasculature|v1.5|December 15, 2023|

docs/Anatomical_Systems/graph.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2024-02-05)
+ASCT+B Validation Reports for Anatomical_Systems (2024-02-28)
 =============================================================
 
 # ASCT+B as Graph

docs/Blood/graph.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2024-02-05)
+ASCT+B Validation Reports for Blood (2024-02-28)
 ================================================
 
 # ASCT+B as Graph

docs/Blood_vasculature/README.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood_vasculature (2024-02-05)
+ASCT+B Validation Reports for Blood_vasculature (2024-02-28)
 ============================================================
 
 Table of contents

docs/Blood_vasculature/graph.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood_vasculature (2024-02-05)
+ASCT+B Validation Reports for Blood_vasculature (2024-02-28)
 ============================================================
 
 # ASCT+B as Graph

docs/Bone-Marrow/graph.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Bone-Marrow (2024-02-05)
+ASCT+B Validation Reports for Bone-Marrow (2024-02-28)
 ======================================================
 
 # ASCT+B as Graph

docs/Brain/graph.md

@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Brain (2024-02-05)
+ASCT+B Validation Reports for Brain (2024-02-28)
 ================================================
 
 # ASCT+B as Graph

docs/Eye/Eye_AS_CT_strict_log.tsv

@@ -1,13 +1,17 @@
 s	slabel	user_slabel	o	olabel	user_olabel	row_number
+CL:0000036	epithelial fate stem cell	epithelial fate stem cell	UBERON:0000482	basal lamina of epithelium	basal epithelium	74
 CL:0000066	epithelial cell	epithelial cell	UBERON:0002506	iris epithelium	iris epithelium	61
+CL:0000125	glial cell	glial cell	UBERON:0018107	foveola of retina	foveola of retina	75
+CL:0000125	glial cell	glial cell	UBERON:0035966	scleral lamina cribrosa	scleral lamina cribrosa	65
+CL:0000125	glial cell	glial cell	UBERON:0004904	neuron projection bundle connecting eye with brain	optic nerve	64
 CL:0000129	microglial cell	microglial cell	UBERON:0000966	retina	retina	48
 CL:0000561	Amacrine Cell	Amacrine Cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	12
 CL:0000573	retinal cone cell	retinal cone cell	UBERON:0001789	outer nuclear layer of retina	outer nuclear layer	33
 CL:0000604	retinal rod cell	retinal rod cell	UBERON:0001789	outer nuclear layer of retina	outer nuclear layer	51
 CL:0000636	Mueller cell	Muller glia	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	49
 CL:0000669	pericyte	Pericyte	UBERON:0004864	vasculature of retina	vasculature	50
-CL:0000740	retinal ganglion cell	Ganglion cell	UBERON:0001792	ganglionic layer of retina	retinal ganglion cell layer	37
 CL:0000740	retinal ganglion cell	Ganglion cell	UBERON:0001792	ganglionic layer of retina	retinal ganglion cell layer	69
+CL:0000740	retinal ganglion cell	Ganglion cell	UBERON:0001792	ganglionic layer of retina	retinal ganglion cell layer	37
 CL:0000745	retina horizontal cell	Horizontal Cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	39
 CL:0002225	secondary lens fiber	mature fiber cell	UBERON:0000390	lens nucleus	Fetal nucleus	44
 CL:0002228	primary lens fiber	primary lens fiber	UBERON:0002444	lens fiber	lens Fibers	38
@@ -16,10 +20,10 @@ CL:0002585	retinal blood vessel endothelial cell	Endothelial Cell	UBERON:0004864
 CL:0004219	A2 amacrine cell	A2 cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	18
 CL:0004232	starburst amacrine cell	starburst amacrine cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	19
 CL:0004253	wide field retinal amacrine cell	wide field cell	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	15
-CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000389	lens cortex	cortex	47
-CL:0011004	lens fiber cell	lens fiber cell	UBERON:0002444	lens Fiber	lens Fiber	53
-CL:0011004	lens fiber cell	lens fiber cell	UBERON:0002444	lens fiber	lens Fibers	41
 CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000389	lens cortex	cortex	46
+CL:0011004	lens fiber cell	lens fiber cell	UBERON:0002444	lens fiber	lens Fibers	41
+CL:0011004	lens fiber cell	lens fiber cell	UBERON:0002444	lens Fiber	lens Fiber	53
+CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000389	lens cortex	cortex	47
 CL:0011004	lens fiber cell	lens fiber cell	UBERON:0000390	lens nucleus	Adult nucleus	45
 CL:0011005	GABAergic interneuron	GABAergic interneuron	UBERON:0001791	inner nuclear layer of retina	inner nuclear layer	13
 CL:0017004	telocyte	telocyte	UBERON:0003952	anterior stroma of cornea	anterior stroma of cornea	57