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Update README.md
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huBioinfo authored Sep 11, 2023
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Expand Up @@ -57,7 +57,7 @@ cd CytoCommunity
conda create --name CytoCommunity --file requirements.txt
```

Note that the command should be executed in the directory containing the environment.yml or requirements.txt file. And if you use the .txt file, please convert it to the UTF-8 format. Installation should take around 8 minutes.
Note that the command should be executed in the directory containing the environment.yml or requirements.txt file. And if you use the .txt file, please convert it to the UTF-8 format.

Alternatively, the requirements can also be installed directly in a new conda environment:
```
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R
> install.packages("diceR")
```

The whole installation should take less than 20 minutes.

## Usage

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```bash
python Step4_Visualization.py
```
The running time for a sample in this dataset should take around 12 minutes.

### Supervised CytoCommunity

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```bash
python Step4_Visualization.py
```
The running time of 10-fold cross validation for this dataset should take around 53 minutes.

## Maintainers

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