Implementation of ImageStack #1538
Workflow file for this run
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - '*' | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 14 * * SUN' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre_commit: | |
| name: Run pre-commit hooks | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: "1" | |
| - name: set PY | |
| run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: pre-commit | |
| uses: pre-commit/[email protected] | |
| test_suite: | |
| name: Pytest on ${{ matrix.python-version }}, Bokeh ${{ matrix.bokeh-version }}, ${{ matrix.os }} | |
| needs: [pre_commit] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest', 'windows-latest'] | |
| python-version: ['3.8', '3.11'] | |
| bokeh-version: ['3'] | |
| timeout-minutes: 120 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| DESC: "Python ${{ matrix.python-version }} - Bokeh ${{ matrix.bokeh-version }} tests" | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| SETUPTOOLS_ENABLE_FEATURES: "legacy-editable" | |
| DISPLAY: ":99.0" | |
| PYTHONIOENCODING: "utf-8" | |
| MPLBACKEND: "Agg" | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OMP_NUM_THREADS: 1 | |
| OPENBLAS_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| VECLIB_MAXIMUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| NUMBA_NUM_THREADS: 1 | |
| PYDEVD_DISABLE_FILE_VALIDATION: 1 | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/[email protected] | |
| with: | |
| name: unit_test_suite_bokeh${{ matrix.bokeh-version }} | |
| python-version: ${{ matrix.python-version }} | |
| channel-priority: strict | |
| channels: pyviz/label/dev,conda-forge,nodefaults | |
| envs: "-o flakes -o tests -o examples_tests -o bokeh${{ matrix.bokeh-version }}" | |
| cache: true | |
| conda-update: true | |
| id: install | |
| - name: bokeh sampledata | |
| run: | | |
| conda activate test-environment | |
| bokeh sampledata | |
| - name: doit test_unit | |
| run: | | |
| conda activate test-environment | |
| doit test_unit | |
| - name: test examples | |
| run: | | |
| conda activate test-environment | |
| mkdir -p ~/.jupyter/ | |
| echo "c.ExecutePreprocessor.startup_timeout=600" >> ~/.jupyter/jupyter_nbconvert_config.py | |
| doit test_examples | |
| - name: codecov | |
| run: | | |
| conda activate test-environment | |
| codecov | |
| ui_test_suite: | |
| name: UI tests on ${{ matrix.os }} with Python 3.9 | |
| needs: [pre_commit] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| timeout-minutes: 60 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| DESC: "Python ${{ matrix.python-version }} tests" | |
| PYTHONIOENCODING: "utf-8" | |
| PANEL_LOG_LEVEL: info | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SETUPTOOLS_ENABLE_FEATURES: "legacy-editable" | |
| # Without this env var `doit env_create ...` uses by default | |
| # the `pyviz` channel, except that we don't want to configure | |
| # it as one of the sources. | |
| PYCTDEV_SELF_CHANNEL: "pyviz/label/dev" | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/[email protected] | |
| with: | |
| name: ui_test_suite | |
| python-version: 3.9 | |
| channels: pyviz/label/dev,bokeh,conda-forge,nodefaults | |
| envs: "-o recommended -o tests -o build" | |
| cache: true | |
| playwright: true | |
| id: install | |
| - name: doit env_capture | |
| run: | | |
| conda activate test-environment | |
| doit env_capture | |
| - name: doit test_ui | |
| run: | | |
| conda activate test-environment | |
| doit test_ui | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| flags: ui-tests | |
| fail_ci_if_error: false # optional (default = false) | |
| core_test: | |
| name: Core test on ${{ matrix.python-version }}, ${{ matrix.os }} | |
| needs: [pre_commit] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.11'] | |
| timeout-minutes: 120 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| DESC: "Python ${{ matrix.python-version }} tests" | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| SETUPTOOLS_ENABLE_FEATURES: "legacy-editable" | |
| DISPLAY: ":99.0" | |
| PYTHONIOENCODING: "utf-8" | |
| MPLBACKEND: "Agg" | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OMP_NUM_THREADS: 1 | |
| OPENBLAS_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| VECLIB_MAXIMUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| NUMBA_NUM_THREADS: 1 | |
| PYDEVD_DISABLE_FILE_VALIDATION: 1 | |
| steps: | |
| - uses: holoviz-dev/holoviz_tasks/[email protected] | |
| with: | |
| name: core_test_suite | |
| python-version: ${{ matrix.python-version }} | |
| channel-priority: strict | |
| channels: pyviz/label/dev,conda-forge,nodefaults | |
| envs: "-o tests_core" | |
| cache: true | |
| conda-update: true | |
| id: install | |
| - name: bokeh sampledata | |
| run: | | |
| conda activate test-environment | |
| bokeh sampledata | |
| - name: Check packages latest version | |
| run: | | |
| conda activate test-environment | |
| python scripts/check_latest_packages.py | |
| - name: doit test_unit | |
| run: | | |
| conda activate test-environment | |
| pytest holoviews |