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Dev testing of subcoordinate_y for stacked traces #75

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merged 2 commits into from
Aug 8, 2023
Merged

Dev testing of subcoordinate_y for stacked traces #75

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6e11777
dev testing of subcoordinate_y arg
droumis Aug 8, 2023
0d116bc
fix rangetool, add annotation and rasterize
droumis Aug 8, 2023
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84 changes: 68 additions & 16 deletions workflows/eeg-viewer/dev/230327_MNE_Qt_EEG_browser.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": 2,
"id": "e848b88f-271f-4608-a1d3-9a76046e57b7",
"metadata": {
"tags": []
Expand All @@ -40,7 +40,17 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": 3,
"id": "f64dc29b-9963-4acb-8927-e112de1a0af7",
"metadata": {},
"outputs": [],
"source": [
"mne.set_config('MNE_DATASETS_SAMPLE_PATH', '/Users/droumis/data/mne_data/')"
]
},
{
"cell_type": "code",
"execution_count": 4,
"id": "ac5dac4a-c73f-4307-b083-11cea9b7f147",
"metadata": {
"tags": []
Expand All @@ -49,10 +59,10 @@
{
"data": {
"text/plain": [
"PosixPath('/Users/droumis/data/MNE-sample-data/MNE-sample-data')"
"PosixPath('/Users/droumis/data/mne_data/MNE-sample-data')"
]
},
"execution_count": 2,
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
Expand All @@ -72,7 +82,7 @@
},
{
"cell_type": "code",
"execution_count": 3,
"execution_count": 12,
"id": "d2c0b381-c224-483d-8c02-48b9f722b1f4",
"metadata": {
"tags": []
Expand All @@ -81,10 +91,10 @@
{
"data": {
"text/plain": [
"PosixPath('/Users/droumis/data/MNE-sample-data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif')"
"PosixPath('/Users/droumis/data/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif')"
]
},
"execution_count": 3,
"execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
Expand All @@ -98,7 +108,7 @@
},
{
"cell_type": "code",
"execution_count": 4,
"execution_count": 14,
"id": "b00c6d20-9239-4102-9935-ac7a8726beb9",
"metadata": {
"tags": []
Expand All @@ -108,7 +118,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
"Opening raw data file /Users/droumis/data/MNE-sample-data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif...\n",
"Opening raw data file /Users/droumis/data/mne_data/MNE-sample-data/MEG/sample/sample_audvis_raw.fif...\n",
" Read a total of 3 projection items:\n",
" PCA-v1 (1 x 102) idle\n",
" PCA-v2 (1 x 102) idle\n",
Expand All @@ -124,7 +134,50 @@
},
{
"cell_type": "code",
"execution_count": 5,
"execution_count": 6,
"id": "16fadf8f-ad0f-4f6a-bb7b-9624e0b288fe",
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"'/Users/droumis/data/mne_data/MNE-testing-data/EDF/test_edf_stim_resamp.edf'"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"sample_data_raw_file = ('/Users/droumis/data/mne_data/MNE-testing-data/EDF/test_edf_stim_resamp.edf')\n",
"sample_data_raw_file"
]
},
{
"cell_type": "code",
"execution_count": 13,
"id": "7ba5e861-c715-4c33-ac78-751354032b76",
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Extracting EDF parameters from /Users/droumis/data/mne_data/S001R04.edf...\n",
"EDF file detected\n",
"Setting channel info structure...\n",
"Creating raw.info structure...\n"
]
}
],
"source": [
"raw = mne.io.read_raw_edf('/Users/droumis/data/mne_data/S001R04.edf')"
]
},
{
"cell_type": "code",
"execution_count": 15,
"id": "3c91f539-941f-4b96-824e-0b2ac76058dc",
"metadata": {
"tags": []
Expand Down Expand Up @@ -225,7 +278,7 @@
">"
]
},
"execution_count": 5,
"execution_count": 15,
"metadata": {},
"output_type": "execute_result"
}
Expand All @@ -244,7 +297,7 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": 16,
"id": "d3e794f9-47cf-4872-a267-a47296519da4",
"metadata": {
"tags": []
Expand All @@ -254,17 +307,16 @@
"name": "stdout",
"output_type": "stream",
"text": [
"Using qt as 2D backend.\n",
"Using pyopengl with version 3.1.6\n"
]
},
{
"data": {
"text/plain": [
"<mne_qt_browser._pg_figure.MNEQtBrowser at 0x283315280>"
"<mne_qt_browser._pg_figure.MNEQtBrowser at 0x17e47b790>"
]
},
"execution_count": 6,
"execution_count": 16,
"metadata": {},
"output_type": "execute_result"
},
Expand All @@ -278,7 +330,7 @@
}
],
"source": [
"raw.plot(duration=10, n_channels=40) # launches GUI"
"raw.plot(duration=10, n_channels=40, clipping=None) # launches GUI"
]
},
{
Expand Down
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