Revise Volume Imaging Ex for use of newly released panel-neuroglancer
#856
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| # Called when someone is committing in a PR. | |
| # This runs: | |
| # - setup: to find out which projects changed compared to main | |
| # - test: test the changed projects in a matrix | |
| # - build: build the changed projects in a matrix, this creates a branch to save the evaluated projects | |
| # - docs: build the dev docs, collecting the evaluated projects from `evaluated` and the new branch | |
| name: test+build+doc | |
| on: | |
| pull_request: | |
| branches: | |
| - "main" | |
| # Cancel previous runs | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| # This permissions will propagate to the workflows called by this workflow. | |
| permissions: | |
| # To allow the build workflow to push to the origin, when actions/checkout is used. | |
| contents: write | |
| # To allow the docs workflow to submit a comment using thollander/actions-comment-pull-request | |
| pull-requests: write | |
| # Project file changes: | |
| # - Always validate it | |
| # - Website only metadata -> Skip test/build | |
| # - Deployment metadata (examples_config.deployments, commands) -> We should redeploy, but skip test/build/doc | |
| # - Docs is special, it's just to pull the `evaluated` branch, and this is only useful to get the built notebooks | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| timeout-minutes: 10 | |
| outputs: | |
| changedprojects: ${{ steps.set-list.outputs.changedprojects }} | |
| removedprojects: ${{ steps.set-list.outputs.removedprojects }} | |
| changedprojectsfile: ${{ steps.set-list.outputs.changedprojectsfile }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 100 | |
| # - uses: hmarr/debug-action@v2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: install deps | |
| # Minimal required deps to run the following script | |
| run: pip install doit pyyaml | |
| - name: infer project list | |
| id: set-list | |
| run: | | |
| CHANGES=$(doit util_list_changed_dirs_with_main --exclude-website-metadata --exclude-deployments-metadata | tail -n -1) | |
| CHANGEDPROJECTS=$(echo $CHANGES | jq -c -r '.changed') | |
| REMOVEDPROJECTS=$(echo $CHANGES | jq -c -r '.removed') | |
| echo "Changed projects: $CHANGEDPROJECTS" | |
| echo "Removed projects: $REMOVEDPROJECTS" | |
| if [ "$CHANGEDPROJECTS" != "[]" -a "$REMOVEDPROJECTS" != "[]" ]; then | |
| echo "No support for removing and updating projects together" | |
| echo "Open a PR that just remove project" | |
| exit 1 | |
| fi | |
| echo "CHANGEDPROJECTS=$CHANGEDPROJECTS" >> $GITHUB_OUTPUT | |
| echo "REMOVEDPROJECTS=$REMOVEDPROJECTS" >> $GITHUB_OUTPUT | |
| # There's logic to skip testing/building when only some metadata in the | |
| # project file changes. In these cases, we still want to validate the project file. | |
| - name: validate project files | |
| run: | | |
| CHANGESPROJECTSFILE=$(doit util_list_changed_dirs_with_main --only-project-file | tail -n -1) | |
| CHANGEDPROJECTSFILE=$(echo $CHANGESPROJECTSFILE | jq -c -r '.changed') | |
| echo "Changed projects (project file only): $CHANGEDPROJECTSFILE" | |
| if [ "$CHANGEDPROJECTSFILE" != "[]" ]; then | |
| items=$(echo $CHANGEDPROJECTSFILE | jq -c -r '.[]') | |
| for item in ${items[@]}; do | |
| doit validate_project_file:$item | |
| done | |
| fi | |
| test: | |
| needs: setup | |
| uses: ./.github/workflows/test.yml | |
| with: | |
| projects: ${{ needs.setup.outputs.changedprojects }} | |
| type: workflow_call | |
| secrets: inherit | |
| build: | |
| needs: [setup, test] | |
| uses: ./.github/workflows/build.yml | |
| with: | |
| projects: ${{ needs.setup.outputs.changedprojects }} | |
| type: workflow_call | |
| branch: ${{ github.event.pull_request.head.ref }} | |
| docs: | |
| needs: [setup, build] | |
| if: needs.build.result == 'success' || needs.build.result == 'skipped' | |
| uses: ./.github/workflows/docs.yml | |
| with: | |
| target: dev | |
| branch: ${{ github.event.pull_request.head.ref }} | |
| changedprojects: ${{ needs.setup.outputs.changedprojects }} | |
| removedprojects: ${{ needs.setup.outputs.removedprojects }} | |
| type: workflow_call | |
| secrets: inherit |