update config, setup, nn_tools for keras 3.0 and torch #244
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| env: | |
| SDSS_LOCAL_SAS_MIRROR: ./ci_data/ | |
| GAIA_TOOLS_DATA: ./ci_data/ | |
| LASMOT_DR5_DATA: ./ci_data/ | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { TORCH_VER: 2.1.0, PAPER_MODELS: true, ALLOW_FAILURE: false } | |
| - { TORCH_VER: 2.1.0, PAPER_MODELS: false, ALLOW_FAILURE: false } | |
| - { TORCH_VER: 2.0.0, PAPER_MODELS: true, ALLOW_FAILURE: false } | |
| - { TORCH_VER: 2.0.0, PAPER_MODELS: false, ALLOW_FAILURE: false } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| pip install torch~=${{ matrix.TORCH_VER }} | |
| pip install --upgrade "keras>=3.0" | |
| pip install coveralls pydot graphviz pytest pytest-cov | |
| pip install . | |
| python -c "from astroNN.config import tf_patch; tf_patch()" | |
| - name: Cache test data | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{github.workspace}}/ci_data/ | |
| key: astronn-${{ runner.os }}-${{ matrix.TORCH_VER }}-${{ matrix.PAPER_MODELS }}-2023april30 | |
| - name: Test astroNN | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| if: ${{ matrix.PAPER_MODELS == false}} | |
| # Run almost all tests for latest config | |
| run: > | |
| python -m pytest --cov astroNN --cov-report=xml tests/test_numpy_tools.py tests/test_loss_func.py | |
| tests/test_layers.py tests/test_apogee_tools.py tests/test_datasets.py tests/test_gaia_tools.py | |
| tests/test_lamost_tools.py tests/test_models.py tests/test_utilities.py tests/test_neuralODE.py | |
| --disable-pytest-warnings | |
| # Run papers models test | |
| - name: Test paper models | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| if: ${{ matrix.PAPER_MODELS == true}} | |
| run: > | |
| python -m pytest --cov astroNN --cov-report=xml tests/test_apogee_model.py tests/test_paper_models.py | |
| --disable-pytest-warnings | |
| - name: Upload coverage reports to Codecov | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| TORCH_VER: ${{ matrix.TORCH_VER }} | |
| PAPER_MODELS: ${{ matrix.PAPER_MODELS }} | |
| with: | |
| flags: unittests | |
| env_vars: TORCH_VER, PAPER_MODELS | |
| name: codecov-astroNN | |
| fail_ci_if_error: true | |
| verbose: true |