fix bnn predict because of dict output #401
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { BACKEND: torch, BACKEND_VER: 2.4.0, PAPER_MODELS: true, ALLOW_FAILURE: true } | |
| - { BACKEND: torch, BACKEND_VER: 2.4.0, PAPER_MODELS: false, ALLOW_FAILURE: false } | |
| - { BACKEND: tensorflow, BACKEND_VER: 2.17.0, PAPER_MODELS: true, ALLOW_FAILURE: true } | |
| - { BACKEND: tensorflow, BACKEND_VER: 2.17.0, PAPER_MODELS: false, ALLOW_FAILURE: false } | |
| # - { BACKEND: jax, BACKEND_VER: 0.4.30, PAPER_MODELS: true, ALLOW_FAILURE: true } | |
| # - { BACKEND: jax, BACKEND_VER: 0.4.30, PAPER_MODELS: false, ALLOW_FAILURE: true } | |
| env: | |
| SDSS_LOCAL_SAS_MIRROR: ./ci_data/ | |
| GAIA_TOOLS_DATA: ./ci_data/ | |
| LASMOT_DR5_DATA: ./ci_data/ | |
| KERAS_BACKEND: ${{ matrix.BACKEND }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| cache: 'pip' # caching pip dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt install graphviz | |
| pip install -r requirements.txt | |
| pip install -r requirements-dev.txt | |
| pip install ${{ matrix.BACKEND }}~=${{ matrix.BACKEND_VER }} | |
| pip install . | |
| - name: Cache test data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{github.workspace}}/ci_data/ | |
| key: astronn-${{ runner.os }}-${{ matrix.BACKEND_VER }}-${{ matrix.PAPER_MODELS }}-2024july22 | |
| - name: Test astroNN | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| if: ${{ matrix.PAPER_MODELS == false}} | |
| # Run almost all tests for latest config | |
| run: > | |
| python -m pytest -v --cov astroNN --doctest-glob="*.rst" --junitxml=junit.xml tests/test_numpy_tools.py tests/test_loss_func.py | |
| tests/test_layers.py tests/test_apogee_tools.py tests/test_datasets.py tests/test_gaia_tools.py | |
| tests/test_lamost_tools.py tests/test_models.py tests/test_utilities.py tests/test_neuralODE.py | |
| # Run papers models test | |
| - name: Test paper models | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| if: ${{ matrix.PAPER_MODELS == true}} | |
| run: > | |
| python -m pytest -v --cov astroNN --doctest-glob="*.rst" --junitxml=junit.xml tests/test_apogee_model.py tests/test_paper_models.py | |
| - name: Upload coverage reports to Codecov | |
| continue-on-error: ${{ matrix.ALLOW_FAILURE }} | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| BACKEND: ${{ matrix.BACKEND }} | |
| BACKEND_VER: ${{ matrix.BACKEND_VER }} | |
| PAPER_MODELS: ${{ matrix.PAPER_MODELS }} | |
| with: | |
| flags: unittests | |
| env_vars: BACKEND, BACKEND_VER, PAPER_MODELS | |
| name: codecov-astroNN | |
| fail_ci_if_error: true | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Upload test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |