Minor tweaks based on final meeting #65
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Install Ersilia | |
| on: | |
| pull_request: | |
| branches: [ master ] | |
| push: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| base: | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Ersilia | |
| run: | | |
| python -m pip install git+https://github.com/ersilia-os/bentoml-ersilia.git | |
| python -m pip install -e . | |
| - name: Test help command | |
| run: | | |
| ersilia --help | |
| ersilia --version | |
| test-docker: | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Ersilia without pre-installing BentoML | |
| run: | | |
| python -m pip install -e . | |
| - name: Test help command again | |
| run: | | |
| ersilia --help | |
| ersilia --version | |
| - name: Fetch molecular weight model from DockerHub | |
| run: | | |
| ersilia -v fetch molecular-weight --from_dockerhub | |
| test: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # [email protected] | |
| - name: Add conda to system path | |
| run: echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Source conda | |
| run: source $CONDA/etc/profile.d/conda.sh | |
| - name: Set Python to 3.10.10 | |
| run: | | |
| conda install -y python=3.10.10 | |
| - name: Install dependencies | |
| run: | | |
| source activate | |
| conda init | |
| conda install git-lfs -c conda-forge | |
| git-lfs install | |
| conda install gh -c conda-forge | |
| - name: Install ersilia from source | |
| run: | | |
| source activate | |
| python --version | |
| echo "After conda init" | |
| conda init | |
| python -m pip install -e . | |
| - name: Ersilia help | |
| run: | | |
| ersilia --help |