Add skeleton code for CDD Vault tracking #64
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| name: Install Ersilia | |
| on: | |
| pull_request: | |
| branches: [ master ] | |
| push: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| base: | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Ersilia | |
| run: | | |
| python -m pip install git+https://github.com/ersilia-os/bentoml-ersilia.git | |
| python -m pip install -e . | |
| - name: Test help command | |
| run: | | |
| ersilia --help | |
| ersilia --version | |
| test-docker: | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Ersilia without pre-installing BentoML | |
| run: | | |
| python -m pip install -e . | |
| - name: Test help command again | |
| run: | | |
| ersilia --help | |
| ersilia --version | |
| - name: Fetch molecular weight model from DockerHub | |
| run: | | |
| ersilia -v fetch molecular-weight --from_dockerhub | |
| test: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # [email protected] | |
| - name: Add conda to system path | |
| run: echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Source conda | |
| run: source $CONDA/etc/profile.d/conda.sh | |
| - name: Set Python to 3.10.10 | |
| run: | | |
| conda install -y python=3.10.10 | |
| - name: Install dependencies | |
| run: | | |
| source activate | |
| conda init | |
| conda install git-lfs -c conda-forge | |
| git-lfs install | |
| conda install gh -c conda-forge | |
| - name: Install ersilia from source | |
| run: | | |
| source activate | |
| python --version | |
| echo "After conda init" | |
| conda init | |
| python -m pip install -e . | |
| - name: Ersilia help | |
| run: | | |
| ersilia --help |