Refactor persistent tracking code #50
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Deploy and test ersilia on PR | |
| on: | |
| pull_request: | |
| branches: [ master ] | |
| push: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # [email protected] | |
| - name: Add conda to system path | |
| run: echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Set Python to 3.10.10 | |
| run: | |
| conda install -y python=3.10.10 | |
| - name: Source conda | |
| run: source $CONDA/etc/profile.d/conda.sh | |
| - name: Install dependencies | |
| run: | | |
| source activate | |
| conda init | |
| conda install git-lfs -c conda-forge | |
| git-lfs install | |
| conda install gh -c conda-forge | |
| - name: Install Ersilia | |
| run: | | |
| source activate | |
| python --version | |
| echo "After conda init" | |
| conda init | |
| python -m pip install -e .[test] | |
| - name: Hub catalog | |
| run: | | |
| ersilia catalog | |
| - name: Fetch model from GitHub | |
| run: | | |
| source activate | |
| ersilia -v fetch molecular-weight --from_github | |
| echo "Serving molecular-weight model." | |
| ersilia serve molecular-weight | |
| ersilia info | |
| ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" | grep "180.15899" | |
| ersilia close | |
| - name: Fetch model from S3 | |
| run: | | |
| source activate | |
| ersilia -v fetch molecular-weight --from_s3 | |
| echo "Serving molecular-weight model." | |
| ersilia serve molecular-weight | |
| ersilia info | |
| ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" | grep "180.15899" | |
| ersilia close | |
| - name: Fetch model from DockerHub | |
| run: | | |
| source activate | |
| ersilia -v fetch molecular-weight --from_dockerhub | |
| echo "Serving molecular-weight model." | |
| ersilia serve molecular-weight | |
| ersilia info | |
| ersilia run -i "CC(=O)OC1=CC=CC=C1C(=O)O" | grep "180.15899" | |
| ersilia close | |
| - name: Local catalog | |
| run: | | |
| ersilia catalog --local |