Merge pull request opendatahub-io#234 from dibryant/fix

Allow runtime script to cp the package from bin to Rpackage default path
harshad16 · May 10, 2024 · fa2d2a6 · fa2d2a6
2 parents ce98720 + ed3789b
commit fa2d2a6
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/rstudio/rhel9-python-3.9/Dockerfile b/rstudio/rhel9-python-3.9/Dockerfile
@@ -52,8 +52,8 @@ RUN chmod -R a+w /usr/lib64/R/library
 ENV LIBLOC /usr/lib64/R/library
 
 # set User R Library path
-RUN mkdir -p /opt/app-root/src/Rpackages/4.3 && chmod -R a+w /opt/app-root/src/Rpackages/4.3
-ENV R_LIBS_USER /opt/app-root/src/Rpackages/4.3
+RUN mkdir -p /opt/app-root/bin/Rpackages/4.3 && chmod -R a+w /opt/app-root/bin/Rpackages/4.3
+ENV R_LIBS_USER /opt/app-root/bin/Rpackages/4.3
 
 WORKDIR /tmp/
 

diff --git a/rstudio/rhel9-python-3.9/run-rstudio.sh b/rstudio/rhel9-python-3.9/run-rstudio.sh
@@ -16,6 +16,13 @@ fi
 
 # Create lib folders if it does not exist
 mkdir -p  /opt/app-root/src/Rpackages/4.3
+for package in /opt/app-root/bin/Rpackages/4.3/*/;
+do
+  package_folder=$(basename "$package")
+  if [ ! -d "/opt/app-root/src/Rpackages/4.3/$package_folder" ]; then
+    cp -r /opt/app-root/bin/Rpackages/4.3/$package_folder /opt/app-root/src/Rpackages/4.3/
+  fi
+done  
 
 # rstudio terminal cant see environment variables set by the container runtime
 # (which breaks kubectl, to fix this we store the KUBERNETES_* env vars in Renviron.site)