logger.warn -> logger.warning (former is now deprecated)

atomate/qchem/drones.py

@@ -324,7 +324,7 @@ def validate_doc(self, d):
         for k, v in self.schema.items():
             diff = v.difference(set(d.get(k, d).keys()))
             if diff:
-                logger.warn("The keys {0} in {1} not set".format(diff, k))
+                logger.warning("The keys {0} in {1} not set".format(diff, k))
 
     @staticmethod
     def get_valid_paths(self, path):

atomate/utils/utils.py

@@ -344,7 +344,7 @@ def get_database(config_file=None, settings=None, admin=False, **kwargs):
         passwd = d["admin_password"] if admin else d["readonly_password"]
         db.authenticate(user, passwd)
     except (KeyError, TypeError, ValueError):
-        logger.warn("No {admin,readonly}_user/password found in config. file, "
+        logger.warning("No {admin,readonly}_user/password found in config. file, "
             "accessing DB without authentication")
     return db
 

atomate/vasp/builders/file_materials.py

@@ -67,7 +67,7 @@ def run(self):
         logger.info("FileMaterials Builder finished processing")
 
     def reset(self):
-        logger.warn("Cannot reset FileMaterials Builder!")
+        logger.warning("Cannot reset FileMaterials Builder!")
 
     @classmethod
     def from_file(cls, db_file, data_file=None, m="materials", **kwargs):

atomate/vasp/builders/fix_tasks.py

@@ -57,7 +57,7 @@ def run(self):
         logger.info("FixTasksBuilder finished.")
 
     def reset(self):
-        logger.warn("Cannot reset FixTasksBuilder!")
+        logger.warning("Cannot reset FixTasksBuilder!")
 
     @classmethod
     def from_file(cls, db_file, t="tasks", **kwargs):

atomate/vasp/builders/tasks_materials.py

@@ -134,7 +134,7 @@ def from_file(cls, db_file, m="materials", c="counter", t="tasks", **kwargs):
             db_read = get_database(db_file, admin=False)
             db_read.collection_names()  # throw error if auth failed
         except:
-            logger.warn("Warning: could not get read-only database; using write creds")
+            logger.warning("Warning: could not get read-only database; using write creds")
             db_read = get_database(db_file, admin=True)
         return cls(db_write[m], db_write[c], db_read[t], **kwargs)
 

atomate/vasp/drones.py

@@ -635,7 +635,7 @@ def validate_doc(self, d):
             else:
                 diff = v.difference(set(d.get(k, d).keys()))
             if diff:
-                logger.warn("The keys {0} in {1} not set".format(diff, k))
+                logger.warning("The keys {0} in {1} not set".format(diff, k))
 
     def get_valid_paths(self, path):
         """

atomate/vasp/firetasks/neb_tasks.py

@@ -348,7 +348,7 @@ def _get_images_by_linear_interp(self, nimages, ep0, ep1):
             images = ep0.interpolate(ep1, nimages=nimages + 1, autosort_tol=sort_tol)
         except Exception as e:
             if "Unable to reliably match structures " in str(e):
-                logger.warn("Auto sorting is turned off because it is unable to match the "
+                logger.warning("Auto sorting is turned off because it is unable to match the "
                             "end-point structures!")
                 images = ep0.interpolate(ep1, nimages=nimages + 1, autosort_tol=0)
             else:

atomate/vasp/firetasks/parse_outputs.py

@@ -143,7 +143,7 @@ def run_task(self, fw_spec):
                     if has(task_doc, path_in_task_doc):
                         update_spec[key] = get(task_doc, path_in_task_doc)
                     else:
-                        logger.warn("Could not find {} in task document. Unable to push to next firetask/firework".format(path_in_task_doc))
+                        logger.warning("Could not find {} in task document. Unable to push to next firetask/firework".format(path_in_task_doc))
             else:
                 raise RuntimeError("Inappropriate type {} for task_fields_to_push. It must be a "
                                    "dictionary of format: {key: path} where key refers to a field "
@@ -443,7 +443,7 @@ def run_task(self, fw_spec):
             # frequency in cm^-1
             omega = nm_frequencies[k]
             if nm_eigenvals[k] > 0:
-                logger.warn("Mode: {} is UNSTABLE. Freq(cm^-1) = {}".format(k, -omega))
+                logger.warning("Mode: {} is UNSTABLE. Freq(cm^-1) = {}".format(k, -omega))
             raman_tensor = scale * raman_tensor * np.sum(nm_norms[k]) / np.sqrt(omega)
             raman_tensor_dict[str(k)] = raman_tensor.tolist()
 
@@ -575,7 +575,7 @@ def run_task(self, fw_spec):
         except:
             import traceback
 
-            logger.warn("Quasi-harmonic analysis failed!")
+            logger.warning("Quasi-harmonic analysis failed!")
             gibbs_dict["success"] = False
             gibbs_dict["traceback"] = traceback.format_exc()
             gibbs_dict['metadata'].update({"task_label_tag": tag})
@@ -799,7 +799,7 @@ def run_task(self, fw_spec):
         idx = energies.index(ground_state_energy)
         ground_state_task_id = docs[idx]["task_id"]
         if energies.count(ground_state_energy) > 1:
-            logger.warn("Multiple identical energies exist, "
+            logger.warning("Multiple identical energies exist, "
                         "duplicate calculations for {}?".format(formula))
 
         # get results for different orderings

atomate/vasp/workflows/base/thermal_expansion.py

@@ -54,7 +54,7 @@ def get_wf_thermal_expansion(structure, deformations, vasp_input_set=None, vasp_
     try:
         from phonopy import Phonopy
     except ImportError:
-        logger.warn("'phonopy' package NOT installed. Required for the final analysis step.")
+        logger.warning("'phonopy' package NOT installed. Required for the final analysis step.")
 
     tag = tag or "thermal_expansion group: >>{}<<".format(str(uuid4()))