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Maxie D. Schmidt edited this page Nov 13, 2019
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- 💁 RNAStructViz FAQ: Browse a list of commonly asked questions about the application
- 🏃 First-time run instructions: View a guide of what to expect when running RNAStructViz for the first time
- 🎆 Screenshots: A visual overview of what the GUI for the application looks like (see also the themes overview)
- 🍎 Mac OSX 10.14 Homebrew (a.k.a. brew) installer instructions are found here
- 🐧 Linux / BSD / Unix platform instructions for from-source installs are found here
- 📃 Specific Mac OSX from-source installation instructions are found here
- 📎 Caveats for the unsupported Windows 10 platform users are explained here
- 🏫 Installation instructions from a user's local home directory, e.g., for sudo-restricted university lab environments, are found here
We provide the following links to documentation on the core features of this application:
- RNA secondary structure visualization. Generate arc diagrams comparing up to three secondary structures using color and transparency. Also includes an export tool allowing generated images to be saved in PNG image format.
- Statistics comparing multiple predicted structures. Given a reference structure, compare multiple predictions on the same sequence by calculating statistics including number of true positives, false positives, false negatives, sensitivity, selectivity, and positive predictive values. Also generates ROC plots and allows exporting of computed statistics in CSV file format.
- Full CT file viewer with highlighing. View CT files, with color coding, without leaving RNAStructViz.
- Limited radial layout viewer. View a selected section of the radial layout diagram for a structure.
- Customization options and UI themes. Fine tune many aspects of the RNAStructViz user interface. Users with accessibility needs can modify most of the colors used in the application, including the primary widget color choices in the UI.
Bug reports, feature requests, and general support inquiries should be posted in a GitHub issues thread. Any requests concerning this WIKI documentation should be posted as a new issue.
RNAStructViz has been developed by the Georgia Tech Research Group in Discrete Mathematics and Molecular Biology (gtDMMB) directed by Professor Christine Heitsch (current credits and citations). All communication about running our software, including instantiating bug reports, feature requests, wiki edits, and general inquiries, is logged via our GitHub issues page. Please view the detailed instructions before posting a new issue about support requests.
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