Reset all pages as dashboards #144
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| name: Run Jupyter Notebook | |
| on: push | |
| permissions: | |
| contents: write | |
| jobs: | |
| run_notebook: | |
| runs-on: ubuntu-latest # You can choose a different runner if needed | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Install Environment with Micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: environment.yml | |
| cache-environment: true | |
| init-shell: bash | |
| post-cleanup: 'all' | |
| # - run: mamba activate mip_figures | |
| # - run: | | |
| # conda info | |
| # conda list | |
| # conda config --show-sources | |
| # conda config --show | |
| # printenv | sort | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: '3.10' # Choose the desired Python version | |
| # cache: 'pip' | |
| # cache-dependency-path: | | |
| # **/requirements*.txt | |
| # - uses: actions/cache@v1 | |
| # id: cache | |
| # with: | |
| # path: ~/.cache/pip | |
| # key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-pip- | |
| # - name: Install | |
| # if: steps.cache.outputs.cache-hit != 'true' | |
| # run: | | |
| # pip install -r requirements.txt | |
| # ipython kernel install --name "python3" --user | |
| - name: Configure Git | |
| run: | | |
| git config --global user.name "${{ github.actor }}" | |
| git config --global user.email "${{ github.actor }}@users.noreply.github.com" | |
| # - name: Discover Scripts | |
| # run: | | |
| # echo "scripts=$(find . -name "*.py")" >> $GITHUB_OUTPUT | |
| # id: discover_scripts | |
| # - name: Run Notebooks | |
| # run: | | |
| # for notebook in ${{ steps.discover_notebooks.outputs.notebooks }}; do | |
| # echo "$notebook" | |
| # notebook_dir=$(dirname "$notebook") | |
| # cd "$notebook_dir" | |
| # jupyter nbconvert --to notebook --execute "$(basename "$notebook")" | |
| # cd - | |
| # done | |
| - name: Run Scripts | |
| run: | | |
| python run_py_scripts.py | |
| - name: Check for modified files | |
| id: git-check | |
| run: | | |
| echo "modified=$(if git diff-index --quiet HEAD --; then echo "false"; else echo "true"; fi)" >> $GITHUB_OUTPUT | |
| if git diff-index --quiet HEAD --; then echo "no changed files"; else echo "some changed files"; fi | |
| - name: Add changes | |
| if: steps.git-check.outputs.modified == 'true' | |
| run: | | |
| git pull --rebase | |
| git add . | |
| git commit -m "Update figures" | |
| echo "Commit done" | |
| - name: Push changes to repository | |
| if: steps.git-check.outputs.modified == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} |