Merge branch 'main' of https://github.com/gschivley/MIP_results_compa… #159

	name: Create GenX op inputs

	on: [push, pull_request] # Triggers on push or pull request events

	jobs:
	run_script:
	runs-on: ubuntu-latest # Specifies the runner environment
	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	with:
	fetch-depth: 1
	- name: Install Environment with Micromamba
	uses: mamba-org/setup-micromamba@main
	with:
	environment-file: environment.yml
	cache-environment: true
	init-shell: bash
	post-cleanup: 'all'

	- name: Configure Git
	run: \|
	git config --global user.name "${{ github.actor }}"
	git config --global user.email "${{ github.actor }}@users.noreply.github.com"
	git config --global rebase.autoStash true

	- name: Find directories and run script using snakemake
	run: \|
	cd bin
	python refresh_op_inputs.py

	- name: Check for modified files
	id: git-check
	run: \|
	echo "modified=$(if git diff-index --quiet HEAD --; then echo "false"; else echo "true"; fi)" >> $GITHUB_OUTPUT
	if git diff-index --quiet HEAD --; then echo "no changed files"; else echo "some changed files"; fi

	- name: Add changes
	if: steps.git-check.outputs.modified == 'true'
	run: \|
	git pull --rebase
	git add .
	git commit -m "Create op inputs"
	echo "Commit done"

	- name: Push changes to repository
	if: steps.git-check.outputs.modified == 'true'
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	branch: ${{ github.ref }}

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