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software_install/index.html

@@ -28,7 +28,7 @@ <h2 id=setting_up_the_environment_on_your_local_computer_with_vscode ><a href="#
 </ol>
 <h2 id=setting_up_the_environment_on_gadi ><a href="#setting_up_the_environment_on_gadi" class=header-anchor >Setting up the environment on Gadi</a></h2>
 <p>First, we will need to log into Gadi. You will receive an email at some point with an invitation to create an account. At the end of the process, you will get a username and password &#40;which you should change&#41;. If your username is <code>aaa777</code>, you can connect to Gadi by typing</p>
-<pre><code class="bash hljs">ssh [email protected]</code></pre>
+<pre><code class="bash hljs">ssh -X [email protected]</code></pre>
 <p>When prompted, enter your password. You should now be logged into Gadi and located in your home directory. We would also recommend setting up passwordless ssh access to Gadi &#40;but it is not required&#41;.</p>
 <p>In addition to your home directory, you have access to a scratch space, a project-wide shared filesystem that is optimized for parallel access. This is where we will be working during the workshop. Start by creating a personal folder within the project&#39;s scratch space and linking it back to your home directory:</p>
 <pre><code class="bash hljs"><span class=hljs-built_in >mkdir</span> /scratch/vp91/<span class=hljs-variable >$USER</span>

workshop-materials/Project.toml

@@ -7,7 +7,6 @@ DrWatson = "634d3b9d-ee7a-5ddf-bec9-22491ea816e1"
 Gridap = "56d4f2e9-7ea1-5844-9cf6-b9c51ca7ce8e"
 GridapDistributed = "f9701e48-63b3-45aa-9a63-9bc6c271f355"
 GridapGmsh = "3025c34a-b394-11e9-2a55-3fee550c04c8"
-GridapPETSc = "bcdc36c2-0c3e-11ea-095a-c9dadae499f1"
 PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 

workshop-materials/README/index.html

@@ -28,7 +28,7 @@ <h2 id=setting_up_the_environment_on_your_local_computer_with_vscode ><a href="#
 </ol>
 <h2 id=setting_up_the_environment_on_gadi ><a href="#setting_up_the_environment_on_gadi" class=header-anchor >Setting up the environment on Gadi</a></h2>
 <p>First, we will need to log into Gadi. You will receive an email at some point with an invitation to create an account. At the end of the process, you will get a username and password &#40;which you should change&#41;. If your username is <code>aaa777</code>, you can connect to Gadi by typing</p>
-<pre><code class="bash hljs">ssh [email protected]</code></pre>
+<pre><code class="bash hljs">ssh -X [email protected]</code></pre>
 <p>When prompted, enter your password. You should now be logged into Gadi and located in your home directory. We would also recommend setting up passwordless ssh access to Gadi &#40;but it is not required&#41;.</p>
 <p>In addition to your home directory, you have access to a scratch space, a project-wide shared filesystem that is optimized for parallel access. This is where we will be working during the workshop. Start by creating a personal folder within the project&#39;s scratch space and linking it back to your home directory:</p>
 <pre><code class="bash hljs"><span class=hljs-built_in >mkdir</span> /scratch/vp91/<span class=hljs-variable >$USER</span>

workshop-materials/gadi/compile/warmup.jl

@@ -1,8 +1,5 @@
 
-#cmd = `
-#  mpiexec -n 4 julia --project=. -O3 -e'using GadiTutorial; main_poisson((2,2))'
-#`
-#run(cmd)
-
 using GadiTutorial
 main_poisson(;nprocs=(1,1))
+main_ins(;nprocs=1,mesh="perforated_plate_tiny.msh",T=0.02)
+main_ins(;nprocs=1,mesh="perforated_slab_tiny.msh",T=0.02)