Merge pull request #954 from greenelab/manual-ref

[ci skip] This build is based on 7106785. This commit was created by the following CI build and job: https://github.com/greenelab/covid19-review/commit/7106785336fdce386aac8bf454a8ce3aced0d9dc/checks https://github.com/greenelab/covid19-review/runs/800755349
greenelab · Apr 30, 2021 · 52459e2 · 52459e2
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diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/greenelab/covid19-review/tree/gh-pages) branch hosts the contents of this directory at <https://greenelab.github.io/covid19-review/>.
-The permalink for this webpage version is <https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/>.
+The permalink for this webpage version is <https://greenelab.github.io/covid19-review/v/7106785336fdce386aac8bf454a8ce3aced0d9dc/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://greenelab.github.io/covid19-review/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`32afa309f69f0466a91acec5d0df3151fe4d61b5`](https://github.com/greenelab/covid19-review/commit/32afa309f69f0466a91acec5d0df3151fe4d61b5).
+[`7106785336fdce386aac8bf454a8ce3aced0d9dc`](https://github.com/greenelab/covid19-review/commit/7106785336fdce386aac8bf454a8ce3aced0d9dc).
diff --git a/index.html b/index.html
@@ -277,13 +277,13 @@
   <meta name="citation_fulltext_html_url" content="https://greenelab.github.io/covid19-review/" />
   <meta name="citation_pdf_url" content="https://greenelab.github.io/covid19-review/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://greenelab.github.io/covid19-review/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/" />
-  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/" />
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+  <link rel="alternate" type="text/html" href="https://greenelab.github.io/covid19-review/v/7106785336fdce386aac8bf454a8ce3aced0d9dc/" />
+  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/covid19-review/v/7106785336fdce386aac8bf454a8ce3aced0d9dc/" />
+  <meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/covid19-review/v/7106785336fdce386aac8bf454a8ce3aced0d9dc/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
-  <meta property="og:image" content="https://github.com/greenelab/covid19-review/raw/32afa309f69f0466a91acec5d0df3151fe4d61b5/content/images/thumbnail.png" />
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+  <meta property="og:image" content="https://github.com/greenelab/covid19-review/raw/7106785336fdce386aac8bf454a8ce3aced0d9dc/content/images/thumbnail.png" />
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@@ -295,9 +295,9 @@ <h1 class="title">SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/">permalink</a>)
+(<a href="https://greenelab.github.io/covid19-review/v/7106785336fdce386aac8bf454a8ce3aced0d9dc/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/greenelab/covid19-review/tree/32afa309f69f0466a91acec5d0df3151fe4d61b5">greenelab/covid19-review@32afa30</a>
+from <a href="https://github.com/greenelab/covid19-review/tree/7106785336fdce386aac8bf454a8ce3aced0d9dc">greenelab/covid19-review@7106785</a>
 on April 30, 2021.
 Snapshots of individual sections are available as preprints <span class="citation" data-cites="r366f5T3 1B22G6dja cifK9B8t">[<a href="#ref-r366f5T3" role="doc-biblioref">1</a>,<a href="#ref-1B22G6dja" role="doc-biblioref">2</a>,<a href="#ref-cifK9B8t" role="doc-biblioref">3</a>]</span>.
 </em></small></p>
@@ -6707,7 +6707,7 @@ <h1 class="page_break_before" data-number="13" id="references"><span class="head
 </div>
 <div id="ref-19CcC5AGf">
 <p>340. <strong>Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies</strong> <br />
-The CITIID-NIHR BioResource COVID-19 Collaboration, The COVID-19 Genomics UK (COG-UK) Consortium, Dami A. Collier, Anna De Marco, Isabella A. T. M. Ferreira, Bo Meng, Rawlings P. Datir, Alexandra C. Walls, Steven A. Kemp, Jessica Bassi, … Ravindra K. Gupta<br />
+Dami A. Collier, Anna De Marco, Isabella A. T. M. Ferreira, Bo Meng, Rawlings P. Datir, Alexandra C. Walls, Steven A. Kemp, Jessica Bassi, Dora Pinto, Chiara Silacci-Fregni, … The COVID-19 Genomics UK (COG-UK) Consortium<br />
 <em>Nature</em> (2021-03-11) <a href="https://doi.org/gjm7v5">https://doi.org/gjm7v5</a> <br />
 DOI: <a href="https://doi.org/10.1038/s41586-021-03412-7">10.1038/s41586-021-03412-7</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/33706364">33706364</a></p>
 </div>
@@ -8709,7 +8709,7 @@ <h1 class="page_break_before" data-number="13" id="references"><span class="head
 <em>The New York Times</em> <a href="https://www.nytimes.com/interactive/2020/science/coronavirus-vaccine-tracker.html">https://www.nytimes.com/interactive/2020/science/coronavirus-vaccine-tracker.html</a></p>
 </div>
 <div id="ref-DQmAgN0V">
-<p>692. <strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=47952720-a9a4-11eb-b220-35440a1e3fdd&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=47952720-a9a4-11eb-b220-35440a1e3fdd&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u</a></p>
+<p>692. <strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=d5b2b190-a9fd-11eb-9b6a-6790f8ef57db&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=d5b2b190-a9fd-11eb-9b6a-6790f8ef57db&amp;url=L2dyYXBoaWNzL2NvdmlkLXZhY2NpbmUtdHJhY2tlci1nbG9iYWwtZGlzdHJpYnV0aW9u</a></p>
 </div>
 <div id="ref-gsNWcXHn">
 <p>693. <strong>Sputnik V, Covishield, Covaxin: What we know about India’s Covid-19 vaccines</strong> <br />
@@ -9755,7 +9755,7 @@ <h1 class="page_break_before" data-number="13" id="references"><span class="head
 <a href="https://ourworldindata.org/covid-vaccinations">https://ourworldindata.org/covid-vaccinations</a></p>
 </div>
 <div id="ref-uvQMgFXB">
-<p>892. <strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=47b09e60-a9a4-11eb-8d50-afb6d4f60e1b&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=47b09e60-a9a4-11eb-8d50-afb6d4f60e1b&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz</a></p>
+<p>892. <strong>Bloomberg - Are you a robot?</strong> <a href="https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=d5d358f0-a9fd-11eb-8d6e-31ca0640cc51&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz">https://www.bloomberg.com/tosv2.html?vid=&amp;uuid=d5d358f0-a9fd-11eb-8d6e-31ca0640cc51&amp;url=L25ld3MvYXJ0aWNsZXMvMjAyMC0xMi0wMi93aXRoaW4taG91cnMtb2YtdS1rLXB1dGluLW9yZGVycy1zdGFydC1vZi1tYXNzLWNvdmlkLTE5LXNob3Rz</a></p>
 </div>
 <div id="ref-Vwv7l7Hd">
 <p>893. <strong>Facing Record Covid-19 Case Rise, Russia Rolls Out Sputnik V Vaccine</strong> <br />

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